BO20632.complete Sequence
361 bp assembled on 2009-05-13
> BO20632.complete
GAAGTTATCAGTCGACATGCACTTCAGGTCGTTGTTCTGGAGAGCCGTGG
TCAGGTCCGAAGACCGATTAGGGGATCCAGCTGGCTACATACGCAACCAG
ATGGGTGACGAGATGTCCAAGCACAAAAAGTTCATCTTCCTGACGTGGAT
CGGGCAGGAGGTGGGCGTTATCCAGCGGGCCAAGATGTCCACGGACAAGG
CGCTGATCAAGGATGTCCTCAACAATTTTGCCGTGGAACTTCAGGCGGGA
GTGGAGGCCGAGCTGGACATTGAGCTCTTCCGTGAAGCACTGAACCTCCA
AGTTACTTTATATATACTGCTTACCAAACTGCTCCTTTCTCTTGCAAGCT
TTCTAGACCAT
BO20632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6891-RC | 441 | CG6891-PC | 183..397 | 82..296 | 1015 | 98.1 | Plus |
| CG6891-RB | 441 | CG6891-PB | 183..397 | 82..296 | 1015 | 98.1 | Plus |
| CG6891-RA | 492 | CG6891-PA | 234..448 | 82..296 | 1015 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6891-RC | 950 | CG6891-RC | 541..755 | 82..296 | 1015 | 98.1 | Plus |
| CG6891-RB | 805 | CG6891-RB | 396..610 | 82..296 | 1015 | 98.1 | Plus |
| CG6891-RA | 994 | CG6891-RA | 585..799 | 82..296 | 1015 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18785721..18785927 | 17..223 | 1035 | 100 | Plus |
| X | 23542271 | X | 18780863..18781004 | 82..223 | 650 | 97.2 | Plus |
| X | 23542271 | X | 18786001..18786120 | 224..343 | 600 | 100 | Plus |
| X | 23542271 | X | 18781078..18781150 | 224..296 | 365 | 100 | Plus |
| 3L | 28110227 | 3L | 26068213..26068280 | 17..84 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26076804..26076871 | 17..84 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26095789..26095856 | 17..84 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26104674..26104741 | 17..84 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 26120181..26120248 | 17..84 | 235 | 89.7 | Plus |
| 3L | 28110227 | 3L | 23303634..23303701 | 17..84 | 235 | 89.7 | Plus |
| 2R | 25286936 | 2R | 1567184..1567251 | 17..84 | 235 | 89.7 | Plus |
| Y | 3667352 | Y | 93622..93681 | 22..81 | 225 | 91.7 | Plus |
| X | 23542271 | X | 6434473..6434540 | 17..84 | 220 | 88.2 | Plus |
| X | 23542271 | X | 22710987..22711054 | 17..84 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 12923766..12923833 | 17..84 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 24422187..24422254 | 84..17 | 220 | 88.2 | Minus |
| 3L | 28110227 | 3L | 24485752..24485819 | 17..84 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 26601233..26601300 | 84..17 | 220 | 88.2 | Minus |
| 3L | 28110227 | 3L | 27049779..27049846 | 84..17 | 220 | 88.2 | Minus |
| 2R | 25286936 | 2R | 1020524..1020591 | 17..84 | 220 | 88.2 | Plus |
| 2R | 25286936 | 2R | 1159733..1159800 | 17..84 | 220 | 88.2 | Plus |
| 2R | 25286936 | 2R | 6459222..6459289 | 17..84 | 220 | 88.2 | Plus |
| Y | 3667352 | Y | 551359..551426 | 84..17 | 220 | 88.2 | Minus |
| Y | 3667352 | Y | 1484192..1484259 | 84..17 | 220 | 88.2 | Minus |
| Y | 3667352 | Y | 1495215..1495282 | 84..17 | 220 | 88.2 | Minus |
| Y | 3667352 | Y | 1722560..1722627 | 84..17 | 220 | 88.2 | Minus |
| Y | 3667352 | Y | 1846282..1846349 | 17..84 | 220 | 88.2 | Plus |
| Y | 3667352 | Y | 1857305..1857372 | 17..84 | 220 | 88.2 | Plus |
| Y | 3667352 | Y | 2241024..2241091 | 84..17 | 220 | 88.2 | Minus |
| Y | 3667352 | Y | 2299592..2299659 | 17..84 | 220 | 88.2 | Plus |
| U | 3151297 | U | 608073..608140 | 84..17 | 220 | 88.2 | Minus |
| U | 3151297 | U | 1351761..1351828 | 84..17 | 220 | 88.2 | Minus |
| 3R | 32079331 | 3R | 1754006..1754073 | 17..84 | 220 | 88.2 | Plus |
| 3R | 32079331 | 3R | 5342880..5342947 | 17..84 | 220 | 88.2 | Plus |
| 3R | 32079331 | 3R | 10958758..10958825 | 84..17 | 220 | 88.2 | Minus |
| 2L | 23513712 | 2L | 10142644..10142711 | 17..84 | 220 | 88.2 | Plus |
| 2L | 23513712 | 2L | 22373322..22373389 | 17..84 | 220 | 88.2 | Plus |
| 2L | 23513712 | 2L | 22624147..22624214 | 84..17 | 220 | 88.2 | Minus |
| 2L | 23513712 | 2L | 23238490..23238557 | 17..84 | 220 | 88.2 | Plus |
| 3L | 28110227 | 3L | 13575582..13575649 | 84..17 | 205 | 86.8 | Minus |
| 3L | 28110227 | 3L | 23477816..23477874 | 81..23 | 205 | 89.8 | Minus |
| U | 3151297 | U | 1558923..1558990 | 17..84 | 205 | 86.8 | Plus |
| 3R | 32079331 | 3R | 3767458..3767507 | 84..35 | 205 | 94 | Minus |
| 2L | 23513712 | 2L | 22615923..22615990 | 84..17 | 205 | 86.8 | Minus |
| Ymm | 880023 | Ymm | 23703..23770 | 17..84 | 205 | 86.8 | Plus |
| 3CEN | 744266 | 3CEN | 160665..160714 | 84..35 | 205 | 94 | Minus |
| 2R | 25286936 | 2R | 1117952..1117996 | 84..40 | 195 | 95.6 | Minus |
| 3R | 32079331 | 3R | 877181..877240 | 81..22 | 195 | 88.3 | Minus |
| 3L | 28110227 | 3L | 20323666..20323729 | 82..17 | 190 | 89.4 | Minus |
| 2R | 25286936 | 2R | 1796725..1796783 | 17..75 | 190 | 88.1 | Plus |
| 2R | 25286936 | 2R | 1821720..1821778 | 17..75 | 190 | 88.1 | Plus |
| Y | 3667352 | Y | 2264821..2264867 | 22..68 | 190 | 93.6 | Plus |
| Y | 3667352 | Y | 2275814..2275860 | 68..22 | 190 | 93.6 | Minus |
| 2R | 25286936 | 2R | 5313344..5313392 | 65..17 | 185 | 91.8 | Minus |
| 2R | 25286936 | 2R | 5442794..5442842 | 65..17 | 185 | 91.8 | Minus |
| 3R | 32079331 | 3R | 3911520..3911579 | 22..81 | 180 | 86.7 | Plus |
| 3R | 32079331 | 3R | 4000047..4000106 | 81..22 | 180 | 86.7 | Minus |
| 3R | 32079331 | 3R | 4004322..4004381 | 81..22 | 180 | 86.7 | Minus |
| 3R | 32079331 | 3R | 4008301..4008360 | 81..22 | 180 | 86.7 | Minus |
Blast to na_te.dros performed 2014-11-28 00:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 666..741 | 92..17 | 272 | 84.2 | Minus |
BO20632.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:12 Download gff for
BO20632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6900-RA | 1..327 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:37 Download gff for
BO20632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 581..802 | 77..302 | 94 | <- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:09 Download gff for
BO20632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6891-RA | 581..802 | 77..302 | 94 | <- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:09 Download gff for
BO20632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18785721..18785927 | 17..223 | 100 | -> | Plus |
| X | 18786001..18786120 | 224..345 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:37 Download gff for
BO20632.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18679754..18679960 | 17..223 | 100 | -> | Plus |
| arm_X | 18680034..18680153 | 224..345 | 98 | | Plus |
BO20632.pep Sequence
Translation from 16 to 361
> BO20632.pep
MHFRSLFWRAVVRSEDRLGDPAGYIRNQMGDEMSKHKKFIFLTWIGQEVG
VIQRAKMSTDKALIKDVLNNFAVELQAGVEAELDIELFREALNLQVTLYI
LLTKLLLSLASFLDH
BO20632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6891-PC | 146 | CG6891-PC | 62..132 | 23..93 | 340 | 97.2 | Plus |
| CG6891-PB | 146 | CG6891-PB | 62..132 | 23..93 | 340 | 97.2 | Plus |
| CG6891-PA | 163 | CG6891-PA | 79..149 | 23..93 | 340 | 97.2 | Plus |
