Clone BO20640 Report

Search the DGRC for BO20640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG15147-RA
Protein status:BO20640.pep: Imported from assembly
Sequenced Size:472

Clone Sequence Records

BO20640.complete Sequence

472 bp assembled on 2009-05-13

GenBank Submission: KX797661

> BO20640.complete
GAAGTTATCAGTCGACATGCCCGACAAAAGGCCACTGGATCCACTCCAGC
CGGTGCTCTACATTGACCACTGCCGTTATCGTCAAACTTATCGCAAGCGA
GCCCTGCACCTCCATTCTTCGCTGGCGGAGGCTCTGAGGGCCATTCAGCC
AAGGGTTAAGCTCCAGCTAAGGATCAACGACAAAGGCCCGCCCGAAGATG
GATCCTTTGAGGTTGCTATTGCTCCGCAACCAACCGATGATTCCACGGCC
CGTCAAAGTGTATGGACTGGACTAAGGCGGATGCCCAGTGCATCGAAGGT
TCCCCATGTGGACGACATTCTCACCCCAGTTTGTTTCGCCCTCAAACTGA
GGGATCCGCACAAGGAATCACATCGGCGGATGCTAACCAATTTGCGGCAC
AACGAAGGCAGTCGACCAAGGACGAGGACTATAAAAAATGTGTTAAATAA
TACCGCAAGCTTTCTAGACCAT

BO20640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-RA 441 CG15147-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-RA 636 CG15147-RA 164..601 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17625781..17626218 454..17 2190 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:24:56 has no hits.

BO20640.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:07 Download gff for BO20640.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 128..565 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:27 Download gff for BO20640.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 129..566 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:02 Download gff for BO20640.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 164..601 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:02 Download gff for BO20640.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17625779..17626218 17..456 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:27 Download gff for BO20640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17625779..17626218 17..456 99   Minus

BO20640.pep Sequence

Translation from 16 to 472

> BO20640.pep
MPDKRPLDPLQPVLYIDHCRYRQTYRKRALHLHSSLAEALRAIQPRVKLQ
LRINDKGPPEDGSFEVAIAPQPTDDSTARQSVWTGLRRMPSASKVPHVDD
ILTPVCFALKLRDPHKESHRRMLTNLRHNEGSRPRTRTIKNVLNNTASFL
DH

BO20640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-PA 146 CG15147-PA 1..146 1..146 773 100 Plus
BthD-PA 249 CG11177-PA 22..127 7..117 163 36.6 Plus