BO20653.complete Sequence
2671 bp assembled on 2010-11-05
GenBank Submission: KX795905
> BO20653.complete
GAAGTTATCAGTCGACATGAAGTCGAGGGAAAAGAATGGGTCTGCGGCTA
GTAACTCGGACGTGGCACTGGTCAATGTTTTATCGCAGCAAAAGCTGAGA
AGGCACAGATTGCCCTGGTACTACGCACCATCCTTTCTCCTCCTATGGGT
GGCTCTATTCTACGCAGTGGTATATCCTTTGTACCATCGCCTGCCCGATA
GCGTCCTTATATCGCATGAATCGAGTAAACCTGGACAATTTGTGGCGGAG
AGGGCGCAAAGGCTGCTCTACAAATACGACAAGATCGGACCCAAGGTGGT
GGGCAGTGTGGCGAATGAGGTGACAACGGTGGCCTTTCTCGAAGAGGAGG
TGGAGAACATCCGGGCGGCAATGCGCAGTGATCTCTACGAGCTGCAGCTG
GATGTCCAACATCCCTCGGGCGCCTACATGCATTGGCAGATGGTGAACAT
GTACCAGGGCGTCACGAATGTGGTTGTTAAGATTAGTAGCCGGAGCTCCA
ATAGTTCATCCTACCTGCTGGTGAACAGTCATTTCGATTCCAAGCCCAGC
AGTCCTGGTTCCGGCGACGATGGCACCATGGTTGTGGTCATGCTGGAAGT
CCTTCGCCAGGTGGCCATATCGGACACCCCATTCGAACATCCCATTGTGT
TTCTGTTCAACGGAGCTGAGGAAAATCCTTTGGAGGCATCGCACGGCTTT
ATTACCCAACATAAATGGGCGGGAAACTGCAAGGCTCTCATAAATCTGGA
AGTGGCAGGCAGCGGAGGTCGTGACCTGTTGTTCCAGAGTGGACCGAATA
ATCCGTGGCTGATCAAGTACTATTACCAGAATGCTAAACATCCGTTTGCC
ACCACAATGGCCGAGGAAATATTTCAGTCTGGCATTTTGCCATCCGATAC
GGATTTCCGTATCTTTCGCGACTACGGACAACTGCCAGGCCTTGACATGG
CGCAAATCAGCAATGGCTATGTATACCATACCATTTTTGATAATGTTCAG
GCGGTGCCCATTGATTCCCTACAAAGTTCTGGAGACAATGCCTTATCTCT
GGTGCGGGCTTTCGCTGATGCGCCTGAAATGCAGAATCCAGAGGATCACA
GCGAAGGACACGCTGTTTTCTTTGACTATCTGGGCCTATTCTTTGTGTAC
TACACGGAAAACACTGGCATAGTCCTTAACTGCTGCATCGCCGTTGCCAG
TTTGGTTCTGGTGGTCTGCTCCCTTTTGAGGATGGGTCGCGAATCGGATG
TCTCTATAGGCCGAGTGTCCATATGGTTCGCCATAATCCTGGTCCTTCAT
GTGCTGGGAATGATCCTCAGTCTCGGGCTGCCGCTGCTGATGGCAGTTTT
GTTCGATGCCGGAGACCGTTCCATGACATACTTCAGCAACAATTGGCTGG
TCATTGGGCTGTTCATCGTTCCAGCAATTATTGGCCAGATTTTGCCCTTG
ACTCTCTACTACACACTAAAACCAAATGACGAAATCAGTCACCCCAATCA
CATACACATGAGCCTCCATGCGCACTGTGTCCTGCTGTCCTTGATTGCCA
TTATCCTCACTGCTATAAGCCTAAGGACTCCGTATCTGTGCATGATGTCC
TTGTTGTTTTATGGAGGAGCTCTGTTGATTAATCTACTAAGCACTCTACA
CGATCGAGGATACTATTGGGTTGTATTGGTGCAAGTCCTGCAACTAGTGC
CCTTCCTGTACTTCTGCTACCTATTCTACACTTTTCTCCTGGTCTTCTTT
CCGATGCTGGGGCGTTTTGGACACGGCACCAATCCTGATCTATTGATCGC
CCTGATCTGCGCGGTTGGAACTTTCTTTGCACTGGGATTTGTGGCTCCTC
TGATAAACATATTCCGCTGGCCCAAATTGGCACTGCTCGGATTGGGAGTG
GTCACGTTTATATTCAGCATGATAGCGGTTTCTGAAGTGGGCTTTCCATA
TCGGGCAAAGACCAGCGTTATGAGAATTCACTTTCTGCACGTTCGGCGCA
TTTTCTATGAGTACGATGGCTCCGTGAGTCTCAGTGATTCCGGCTACTAC
TTCGACTTCCAGGATCGTCGTCTCTATTATCCACTGGAAAACACCTCTGT
CAATCTAACTGGCTTGGCTAGCACATCCTCCGAGTGCGATAAGTACCTGA
TGTGCGGAGTTCCCTGCTTCAATCACCGTTGGTGTAAGACGCGCGCCAAG
AGCCATTGGTTGCCTCGGGAGCAGGAGGTGGCCATTCCAGGAGCGACTTC
CCTAAAGCTTCTCAGCAAAGCAGTTTTGGACTCCGGAAAGGTGGCCAGGT
TTGAGTTCGAGATCTCGGGGCCACCGCACATGAGCCTGTATATTCAACCT
CTGGATGGGGTTGAAGTGGAGGATTGGTCATTCATTCGGAACATGCTGGA
TGAACCCGACACCTACTCACCGCCATATCAAATATTCTTTGCCTACGGTG
CGGATAATACCCCCTTAAAGTTTCATATTGATTTTGCAAAATCCTCGGGT
GACTTTAGCACTCCAACTTTCCAGCTAGGATTCGCTGCCAGTTTTGTTAG
CTACGATTATGATCGAGATGCTGCCGGCCTGAAGTTCATATCCGATTTTC
CCGACTTTGCTCACGTTATGGAATGGCCTACGTTGTATGAACGATATATA
TTCGCAAGCTTTCTAGACCAT
BO20653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30047-RA | 2640 | CG30047-PA | 1..2637 | 17..2653 | 13185 | 100 | Plus |
CG30043-RA | 2637 | CG30043-PA | 421..879 | 440..898 | 780 | 78 | Plus |
CG30049-RA | 2637 | CG30049-PA | 97..962 | 116..981 | 580 | 71.1 | Plus |
CG30043-RA | 2637 | CG30043-PA | 1563..2046 | 1582..2065 | 395 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30047-RA | 2809 | CG30047-RA | 43..2685 | 11..2653 | 13215 | 100 | Plus |
CG30043-RA | 3082 | CG30043-RA | 485..943 | 440..898 | 780 | 78 | Plus |
CG30049-RA | 2796 | CG30049-RA | 141..1006 | 116..981 | 580 | 71.1 | Plus |
CG30043-RA | 3082 | CG30043-RA | 1627..2110 | 1582..2065 | 395 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12351920..12352441 | 38..559 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 12354565..12355066 | 1987..2488 | 2510 | 100 | Plus |
2R | 25286936 | 2R | 12353439..12353825 | 1092..1478 | 1935 | 100 | Plus |
2R | 25286936 | 2R | 12354120..12354307 | 1657..1844 | 940 | 100 | Plus |
2R | 25286936 | 2R | 12353884..12354065 | 1478..1659 | 910 | 100 | Plus |
2R | 25286936 | 2R | 12352496..12352672 | 557..733 | 885 | 100 | Plus |
2R | 25286936 | 2R | 12355125..12355289 | 2489..2653 | 825 | 100 | Plus |
2R | 25286936 | 2R | 12353220..12353377 | 937..1094 | 790 | 100 | Plus |
2R | 25286936 | 2R | 12354360..12354504 | 1843..1987 | 725 | 100 | Plus |
2R | 25286936 | 2R | 12353040..12353163 | 816..939 | 620 | 100 | Plus |
2R | 25286936 | 2R | 12360157..12360330 | 560..733 | 465 | 84.5 | Plus |
2R | 25286936 | 2R | 12352728..12352818 | 727..817 | 440 | 98.9 | Plus |
2R | 25286936 | 2R | 291207..291315 | 2526..2634 | 395 | 90.8 | Plus |
2CEN | 225573 | 2CEN | 154034..154142 | 2526..2634 | 395 | 90.8 | Plus |
2R | 25286936 | 2R | 19377593..19377688 | 638..733 | 270 | 85.4 | Plus |
2R | 25286936 | 2R | 12358581..12358716 | 2321..2456 | 245 | 78.7 | Plus |
2R | 25286936 | 2R | 291061..291137 | 2412..2488 | 235 | 87 | Plus |
2CEN | 225573 | 2CEN | 153888..153964 | 2412..2488 | 235 | 87 | Plus |
2R | 25286936 | 2R | 290904..290964 | 1861..1921 | 230 | 91.8 | Plus |
2CEN | 225573 | 2CEN | 153731..153791 | 1861..1921 | 230 | 91.8 | Plus |
2R | 25286936 | 2R | 12356731..12356843 | 816..928 | 220 | 79.6 | Plus |
2R | 25286936 | 2R | 12357119..12357261 | 1092..1234 | 220 | 76.9 | Plus |
2R | 25286936 | 2R | 12367917..12368039 | 431..553 | 210 | 78 | Plus |
2R | 25286936 | 2R | 12362121..12362193 | 1993..2065 | 185 | 83.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:33:43 has no hits.
BO20653.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:14 Download gff for
BO20653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 1..2637 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:56 Download gff for
BO20653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 49..2685 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:44 Download gff for
BO20653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30047-RA | 49..2685 | 17..2655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:44 Download gff for
BO20653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12353222..12353376 | 939..1093 | 100 | -> | Plus |
2R | 12351841..12351861 | 17..37 | 100 | -> | Plus |
2R | 12351920..12352439 | 38..557 | 100 | -> | Plus |
2R | 12352497..12352671 | 558..732 | 100 | -> | Plus |
2R | 12352734..12352818 | 733..817 | 100 | -> | Plus |
2R | 12353042..12353162 | 818..938 | 100 | -> | Plus |
2R | 12353441..12353824 | 1094..1477 | 100 | -> | Plus |
2R | 12353884..12354064 | 1478..1658 | 100 | -> | Plus |
2R | 12354122..12354306 | 1659..1843 | 100 | -> | Plus |
2R | 12354361..12354504 | 1844..1987 | 100 | -> | Plus |
2R | 12354566..12355066 | 1988..2488 | 100 | -> | Plus |
2R | 12355125..12355289 | 2489..2655 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:56 Download gff for
BO20653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8239346..8239366 | 17..37 | 100 | -> | Plus |
arm_2R | 8239425..8239944 | 38..557 | 100 | -> | Plus |
arm_2R | 8240002..8240176 | 558..732 | 100 | -> | Plus |
arm_2R | 8240239..8240323 | 733..817 | 100 | -> | Plus |
arm_2R | 8240547..8240667 | 818..938 | 100 | -> | Plus |
arm_2R | 8240727..8240881 | 939..1093 | 100 | -> | Plus |
arm_2R | 8240946..8241329 | 1094..1477 | 100 | -> | Plus |
arm_2R | 8241389..8241569 | 1478..1658 | 100 | -> | Plus |
arm_2R | 8241627..8241811 | 1659..1843 | 100 | -> | Plus |
arm_2R | 8241866..8242009 | 1844..1987 | 100 | -> | Plus |
arm_2R | 8242071..8242571 | 1988..2488 | 100 | -> | Plus |
arm_2R | 8242630..8242794 | 2489..2655 | 98 | | Plus |
BO20653.pep Sequence
Translation from 16 to 2671
> BO20653.pep
MKSREKNGSAASNSDVALVNVLSQQKLRRHRLPWYYAPSFLLLWVALFYA
VVYPLYHRLPDSVLISHESSKPGQFVAERAQRLLYKYDKIGPKVVGSVAN
EVTTVAFLEEEVENIRAAMRSDLYELQLDVQHPSGAYMHWQMVNMYQGVT
NVVVKISSRSSNSSSYLLVNSHFDSKPSSPGSGDDGTMVVVMLEVLRQVA
ISDTPFEHPIVFLFNGAEENPLEASHGFITQHKWAGNCKALINLEVAGSG
GRDLLFQSGPNNPWLIKYYYQNAKHPFATTMAEEIFQSGILPSDTDFRIF
RDYGQLPGLDMAQISNGYVYHTIFDNVQAVPIDSLQSSGDNALSLVRAFA
DAPEMQNPEDHSEGHAVFFDYLGLFFVYYTENTGIVLNCCIAVASLVLVV
CSLLRMGRESDVSIGRVSIWFAIILVLHVLGMILSLGLPLLMAVLFDAGD
RSMTYFSNNWLVIGLFIVPAIIGQILPLTLYYTLKPNDEISHPNHIHMSL
HAHCVLLSLIAIILTAISLRTPYLCMMSLLFYGGALLINLLSTLHDRGYY
WVVLVQVLQLVPFLYFCYLFYTFLLVFFPMLGRFGHGTNPDLLIALICAV
GTFFALGFVAPLINIFRWPKLALLGLGVVTFIFSMIAVSEVGFPYRAKTS
VMRIHFLHVRRIFYEYDGSVSLSDSGYYFDFQDRRLYYPLENTSVNLTGL
ASTSSECDKYLMCGVPCFNHRWCKTRAKSHWLPREQEVAIPGATSLKLLS
KAVLDSGKVARFEFEISGPPHMSLYIQPLDGVEVEDWSFIRNMLDEPDTY
SPPYQIFFAYGADNTPLKFHIDFAKSSGDFSTPTFQLGFAASFVSYDYDR
DAAGLKFISDFPDFAHVMEWPTLYERYIFASFLDH
BO20653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30047-PA | 879 | CG30047-PA | 1..879 | 1..879 | 4617 | 100 | Plus |
CG30043-PA | 878 | CG30043-PA | 12..878 | 15..879 | 3170 | 67.1 | Plus |
CG30049-PA | 878 | CG30049-PA | 6..878 | 7..879 | 3148 | 65.4 | Plus |
CG33012-PC | 912 | CG33012-PC | 46..912 | 14..879 | 2600 | 54.2 | Plus |
CG13160-PA | 874 | CG13160-PA | 5..874 | 6..879 | 2526 | 52.6 | Plus |