Clone BO20653 Report

Search the DGRC for BO20653

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG30047-RA
Protein status:BO20653.pep: Imported from assembly
Sequenced Size:2671

Clone Sequence Records

BO20653.complete Sequence

2671 bp assembled on 2010-11-05

GenBank Submission: KX795905

> BO20653.complete
GAAGTTATCAGTCGACATGAAGTCGAGGGAAAAGAATGGGTCTGCGGCTA
GTAACTCGGACGTGGCACTGGTCAATGTTTTATCGCAGCAAAAGCTGAGA
AGGCACAGATTGCCCTGGTACTACGCACCATCCTTTCTCCTCCTATGGGT
GGCTCTATTCTACGCAGTGGTATATCCTTTGTACCATCGCCTGCCCGATA
GCGTCCTTATATCGCATGAATCGAGTAAACCTGGACAATTTGTGGCGGAG
AGGGCGCAAAGGCTGCTCTACAAATACGACAAGATCGGACCCAAGGTGGT
GGGCAGTGTGGCGAATGAGGTGACAACGGTGGCCTTTCTCGAAGAGGAGG
TGGAGAACATCCGGGCGGCAATGCGCAGTGATCTCTACGAGCTGCAGCTG
GATGTCCAACATCCCTCGGGCGCCTACATGCATTGGCAGATGGTGAACAT
GTACCAGGGCGTCACGAATGTGGTTGTTAAGATTAGTAGCCGGAGCTCCA
ATAGTTCATCCTACCTGCTGGTGAACAGTCATTTCGATTCCAAGCCCAGC
AGTCCTGGTTCCGGCGACGATGGCACCATGGTTGTGGTCATGCTGGAAGT
CCTTCGCCAGGTGGCCATATCGGACACCCCATTCGAACATCCCATTGTGT
TTCTGTTCAACGGAGCTGAGGAAAATCCTTTGGAGGCATCGCACGGCTTT
ATTACCCAACATAAATGGGCGGGAAACTGCAAGGCTCTCATAAATCTGGA
AGTGGCAGGCAGCGGAGGTCGTGACCTGTTGTTCCAGAGTGGACCGAATA
ATCCGTGGCTGATCAAGTACTATTACCAGAATGCTAAACATCCGTTTGCC
ACCACAATGGCCGAGGAAATATTTCAGTCTGGCATTTTGCCATCCGATAC
GGATTTCCGTATCTTTCGCGACTACGGACAACTGCCAGGCCTTGACATGG
CGCAAATCAGCAATGGCTATGTATACCATACCATTTTTGATAATGTTCAG
GCGGTGCCCATTGATTCCCTACAAAGTTCTGGAGACAATGCCTTATCTCT
GGTGCGGGCTTTCGCTGATGCGCCTGAAATGCAGAATCCAGAGGATCACA
GCGAAGGACACGCTGTTTTCTTTGACTATCTGGGCCTATTCTTTGTGTAC
TACACGGAAAACACTGGCATAGTCCTTAACTGCTGCATCGCCGTTGCCAG
TTTGGTTCTGGTGGTCTGCTCCCTTTTGAGGATGGGTCGCGAATCGGATG
TCTCTATAGGCCGAGTGTCCATATGGTTCGCCATAATCCTGGTCCTTCAT
GTGCTGGGAATGATCCTCAGTCTCGGGCTGCCGCTGCTGATGGCAGTTTT
GTTCGATGCCGGAGACCGTTCCATGACATACTTCAGCAACAATTGGCTGG
TCATTGGGCTGTTCATCGTTCCAGCAATTATTGGCCAGATTTTGCCCTTG
ACTCTCTACTACACACTAAAACCAAATGACGAAATCAGTCACCCCAATCA
CATACACATGAGCCTCCATGCGCACTGTGTCCTGCTGTCCTTGATTGCCA
TTATCCTCACTGCTATAAGCCTAAGGACTCCGTATCTGTGCATGATGTCC
TTGTTGTTTTATGGAGGAGCTCTGTTGATTAATCTACTAAGCACTCTACA
CGATCGAGGATACTATTGGGTTGTATTGGTGCAAGTCCTGCAACTAGTGC
CCTTCCTGTACTTCTGCTACCTATTCTACACTTTTCTCCTGGTCTTCTTT
CCGATGCTGGGGCGTTTTGGACACGGCACCAATCCTGATCTATTGATCGC
CCTGATCTGCGCGGTTGGAACTTTCTTTGCACTGGGATTTGTGGCTCCTC
TGATAAACATATTCCGCTGGCCCAAATTGGCACTGCTCGGATTGGGAGTG
GTCACGTTTATATTCAGCATGATAGCGGTTTCTGAAGTGGGCTTTCCATA
TCGGGCAAAGACCAGCGTTATGAGAATTCACTTTCTGCACGTTCGGCGCA
TTTTCTATGAGTACGATGGCTCCGTGAGTCTCAGTGATTCCGGCTACTAC
TTCGACTTCCAGGATCGTCGTCTCTATTATCCACTGGAAAACACCTCTGT
CAATCTAACTGGCTTGGCTAGCACATCCTCCGAGTGCGATAAGTACCTGA
TGTGCGGAGTTCCCTGCTTCAATCACCGTTGGTGTAAGACGCGCGCCAAG
AGCCATTGGTTGCCTCGGGAGCAGGAGGTGGCCATTCCAGGAGCGACTTC
CCTAAAGCTTCTCAGCAAAGCAGTTTTGGACTCCGGAAAGGTGGCCAGGT
TTGAGTTCGAGATCTCGGGGCCACCGCACATGAGCCTGTATATTCAACCT
CTGGATGGGGTTGAAGTGGAGGATTGGTCATTCATTCGGAACATGCTGGA
TGAACCCGACACCTACTCACCGCCATATCAAATATTCTTTGCCTACGGTG
CGGATAATACCCCCTTAAAGTTTCATATTGATTTTGCAAAATCCTCGGGT
GACTTTAGCACTCCAACTTTCCAGCTAGGATTCGCTGCCAGTTTTGTTAG
CTACGATTATGATCGAGATGCTGCCGGCCTGAAGTTCATATCCGATTTTC
CCGACTTTGCTCACGTTATGGAATGGCCTACGTTGTATGAACGATATATA
TTCGCAAGCTTTCTAGACCAT

BO20653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30047-RA 2640 CG30047-PA 1..2637 17..2653 13185 100 Plus
CG30043-RA 2637 CG30043-PA 421..879 440..898 780 78 Plus
CG30049-RA 2637 CG30049-PA 97..962 116..981 580 71.1 Plus
CG30043-RA 2637 CG30043-PA 1563..2046 1582..2065 395 72.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG30047-RA 2809 CG30047-RA 43..2685 11..2653 13215 100 Plus
CG30043-RA 3082 CG30043-RA 485..943 440..898 780 78 Plus
CG30049-RA 2796 CG30049-RA 141..1006 116..981 580 71.1 Plus
CG30043-RA 3082 CG30043-RA 1627..2110 1582..2065 395 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12351920..12352441 38..559 2610 100 Plus
2R 25286936 2R 12354565..12355066 1987..2488 2510 100 Plus
2R 25286936 2R 12353439..12353825 1092..1478 1935 100 Plus
2R 25286936 2R 12354120..12354307 1657..1844 940 100 Plus
2R 25286936 2R 12353884..12354065 1478..1659 910 100 Plus
2R 25286936 2R 12352496..12352672 557..733 885 100 Plus
2R 25286936 2R 12355125..12355289 2489..2653 825 100 Plus
2R 25286936 2R 12353220..12353377 937..1094 790 100 Plus
2R 25286936 2R 12354360..12354504 1843..1987 725 100 Plus
2R 25286936 2R 12353040..12353163 816..939 620 100 Plus
2R 25286936 2R 12360157..12360330 560..733 465 84.5 Plus
2R 25286936 2R 12352728..12352818 727..817 440 98.9 Plus
2R 25286936 2R 291207..291315 2526..2634 395 90.8 Plus
2CEN 225573 2CEN 154034..154142 2526..2634 395 90.8 Plus
2R 25286936 2R 19377593..19377688 638..733 270 85.4 Plus
2R 25286936 2R 12358581..12358716 2321..2456 245 78.7 Plus
2R 25286936 2R 291061..291137 2412..2488 235 87 Plus
2CEN 225573 2CEN 153888..153964 2412..2488 235 87 Plus
2R 25286936 2R 290904..290964 1861..1921 230 91.8 Plus
2CEN 225573 2CEN 153731..153791 1861..1921 230 91.8 Plus
2R 25286936 2R 12356731..12356843 816..928 220 79.6 Plus
2R 25286936 2R 12357119..12357261 1092..1234 220 76.9 Plus
2R 25286936 2R 12367917..12368039 431..553 210 78 Plus
2R 25286936 2R 12362121..12362193 1993..2065 185 83.6 Plus
Blast to na_te.dros performed on 2014-11-26 15:33:43 has no hits.

BO20653.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:14 Download gff for BO20653.complete
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 1..2637 17..2655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:56 Download gff for BO20653.complete
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 49..2685 17..2655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:44 Download gff for BO20653.complete
Subject Subject Range Query Range Percent Splice Strand
CG30047-RA 49..2685 17..2655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:44 Download gff for BO20653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12353222..12353376 939..1093 100 -> Plus
2R 12351841..12351861 17..37 100 -> Plus
2R 12351920..12352439 38..557 100 -> Plus
2R 12352497..12352671 558..732 100 -> Plus
2R 12352734..12352818 733..817 100 -> Plus
2R 12353042..12353162 818..938 100 -> Plus
2R 12353441..12353824 1094..1477 100 -> Plus
2R 12353884..12354064 1478..1658 100 -> Plus
2R 12354122..12354306 1659..1843 100 -> Plus
2R 12354361..12354504 1844..1987 100 -> Plus
2R 12354566..12355066 1988..2488 100 -> Plus
2R 12355125..12355289 2489..2655 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:56 Download gff for BO20653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8239346..8239366 17..37 100 -> Plus
arm_2R 8239425..8239944 38..557 100 -> Plus
arm_2R 8240002..8240176 558..732 100 -> Plus
arm_2R 8240239..8240323 733..817 100 -> Plus
arm_2R 8240547..8240667 818..938 100 -> Plus
arm_2R 8240727..8240881 939..1093 100 -> Plus
arm_2R 8240946..8241329 1094..1477 100 -> Plus
arm_2R 8241389..8241569 1478..1658 100 -> Plus
arm_2R 8241627..8241811 1659..1843 100 -> Plus
arm_2R 8241866..8242009 1844..1987 100 -> Plus
arm_2R 8242071..8242571 1988..2488 100 -> Plus
arm_2R 8242630..8242794 2489..2655 98   Plus

BO20653.pep Sequence

Translation from 16 to 2671

> BO20653.pep
MKSREKNGSAASNSDVALVNVLSQQKLRRHRLPWYYAPSFLLLWVALFYA
VVYPLYHRLPDSVLISHESSKPGQFVAERAQRLLYKYDKIGPKVVGSVAN
EVTTVAFLEEEVENIRAAMRSDLYELQLDVQHPSGAYMHWQMVNMYQGVT
NVVVKISSRSSNSSSYLLVNSHFDSKPSSPGSGDDGTMVVVMLEVLRQVA
ISDTPFEHPIVFLFNGAEENPLEASHGFITQHKWAGNCKALINLEVAGSG
GRDLLFQSGPNNPWLIKYYYQNAKHPFATTMAEEIFQSGILPSDTDFRIF
RDYGQLPGLDMAQISNGYVYHTIFDNVQAVPIDSLQSSGDNALSLVRAFA
DAPEMQNPEDHSEGHAVFFDYLGLFFVYYTENTGIVLNCCIAVASLVLVV
CSLLRMGRESDVSIGRVSIWFAIILVLHVLGMILSLGLPLLMAVLFDAGD
RSMTYFSNNWLVIGLFIVPAIIGQILPLTLYYTLKPNDEISHPNHIHMSL
HAHCVLLSLIAIILTAISLRTPYLCMMSLLFYGGALLINLLSTLHDRGYY
WVVLVQVLQLVPFLYFCYLFYTFLLVFFPMLGRFGHGTNPDLLIALICAV
GTFFALGFVAPLINIFRWPKLALLGLGVVTFIFSMIAVSEVGFPYRAKTS
VMRIHFLHVRRIFYEYDGSVSLSDSGYYFDFQDRRLYYPLENTSVNLTGL
ASTSSECDKYLMCGVPCFNHRWCKTRAKSHWLPREQEVAIPGATSLKLLS
KAVLDSGKVARFEFEISGPPHMSLYIQPLDGVEVEDWSFIRNMLDEPDTY
SPPYQIFFAYGADNTPLKFHIDFAKSSGDFSTPTFQLGFAASFVSYDYDR
DAAGLKFISDFPDFAHVMEWPTLYERYIFASFLDH

BO20653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30047-PA 879 CG30047-PA 1..879 1..879 4617 100 Plus
CG30043-PA 878 CG30043-PA 12..878 15..879 3170 67.1 Plus
CG30049-PA 878 CG30049-PA 6..878 7..879 3148 65.4 Plus
CG33012-PC 912 CG33012-PC 46..912 14..879 2600 54.2 Plus
CG13160-PA 874 CG13160-PA 5..874 6..879 2526 52.6 Plus