BO20657.complete Sequence
1543 bp assembled on 2010-10-20
GenBank Submission: KX798260
> BO20657.complete
GAAGTTATCAGTCGACATGTGTTCCAAAGCATTGCTGCTCCTGGCCGTCA
TTCTAGCTGCTCGCTGTTTTGGTAGTGGCTCTTCCAGACGAACGCTCGCC
ATGGCCTGCGAGGAGACGATGGAATCGACGCCGGGGCTCAAAAACAATAG
ATATGGCTATAGAAGCGCCACGGACAACAACTACAACGATTACAACTACA
AGTGGGAGCACGGGGATGTGGACGTTGATGGCATTGCAGATAGCAACGAG
GACGACAACAATGACAACTATAACTACAACAAAGCACCGGCCAAATGGCA
GCAGCAACAGCAGCAAAAACTCTACGGAAATCCCATCCACAGCATATACG
ACAGGCAGCAACATCTACAACGGCAGCAGCAGCAGCAACATGAGCAGCAG
CAACAACAGCAACATCAACAGCAGCAACTCGAACAGCAGCAACAGGGATT
GGGAATGGAAATGGGACTGGGACAGTTTGATGATGATCCAGAGAATGCTC
GCAACGACTTCCGTCTGCAATTGTCCGACTTAAATGCGGCCGTTCAAGGT
ATGGGCAGGTTTGCTGTTACCCAGGACCAGAACAAAGACCAGGACAACAG
CAATAGTAATAGCAACAGCAATGGCAACAGCAACAGCATCATCAAGGACA
ACAGCAACATCGACTGGCTGCAGCCGATGGAGGAGCAGGAGCAATTGTTG
CTGGAGCGTCGCAGCCGCAGCAGCAACATCAACCAAAGGTCAGCCATGGA
TGAAGCAGGCGGAGCAGGGGAACCAGGTCAGCCCGAGTACACCAACAATG
AGTTACCATCTGGCGGTCTAGATGATGTGGACATTGAGGGCGAGGAGGAT
TACGCAGGTCAAGAGGAGGACGCAGACGAACTGAGTTCACAGATGCCCTA
CGGGATACAGAACGTGCGCAAGCGCCGCGTTCGCAGTGTAATGCCACCGG
TACCATTTCTGGGCCCCAATCCCAGCTCAGATGGGGTAGTCACCTATCAG
TCGTTGTGCCCCACAAATCGGGTGACCGTGAAGTTGGAAAGCGGCGATTA
CCGTCCCAATCACTATGTGGAGGTTACATGTGCCCACAACTACTCACCGC
AGCCCTCGAGGAACTATAACTATGAATATGGTTACAGGGGCAATGAACTG
CTCCGAGCTCTGCTCTCCGAGCGAAGCGAGAAACGAGAGATCTGCTCGGC
AACGGGCTTCTCGTGCATCCAGCTCAACCGCACCATCCATCTGATTCGAC
TGAATGACGCCTCCGGCTGCTGGGAATCAGAGACGCGGACGGTGCCCTCT
GGTTGTGAGTGCATGTGGCCGAAGCATAGCTACGGCGATATAGCCTTCTA
CCATCAGGCGCAGAAGAGACGGGCCGGCGTGTCCAGTCTGCGACCCCATG
CACCAATCAATGTGGATTACAAGCCGGGAGTGGGCTACCGCCAGCTGACC
CTGAGGACGAGGAATCCCAAGCCAGCTCCTCGCAGTCGACGCGAGGATAT
GGGCTATGAGAGCTCAGATTTCAACGCAAGCTTTCTAGACCAT
BO20657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34386-RD | 1512 | CG34386-PD | 1..1509 | 17..1525 | 7545 | 100 | Plus |
CG34386-RC | 1512 | CG34386-PC | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34386-RD | 2180 | CG34386-RD | 507..2016 | 16..1525 | 7550 | 100 | Plus |
CG34386-RC | 1891 | CG34386-RC | 218..1727 | 16..1525 | 7550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18089961..18090667 | 34..740 | 3535 | 100 | Plus |
2R | 25286936 | 2R | 18093127..18093464 | 1188..1525 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 18092550..18092801 | 737..988 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 18092862..18093066 | 985..1189 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 27737534..27737576 | 596..638 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2014-11-26 15:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6918 | 238..444 | 385 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2891 | 145..735 | 374 | 56.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6883 | 278..445 | 374 | 71.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6901 | 256..442 | 363 | 69.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2507 | 239..445 | 361 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2690 | 294..669 | 356 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6943 | 242..445 | 334 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2524 | 242..444 | 333 | 64.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2550 | 242..442 | 315 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2434 | 290..444 | 293 | 70.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2411 | 334..445 | 291 | 77.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2446 | 297..444 | 284 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6878 | 582..744 | 270 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6456..6889 | 294..738 | 264 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2933 | 283..445 | 258 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6902 | 572..736 | 253 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2512 | 571..766 | 239 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6952 | 240..424 | 237 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2502 | 572..733 | 232 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2494 | 598..797 | 229 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2946 | 252..446 | 218 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6929 | 572..739 | 218 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6912 | 602..797 | 217 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..3032 | 242..694 | 213 | 56.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1164 | 572..665 | 199 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..7011 | 572..737 | 194 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2412 | 623..733 | 187 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2451 | 584..733 | 182 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6951 | 572..731 | 177 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6939 | 572..693 | 169 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7037 | 161..446 | 168 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1494..1581 | 566..661 | 164 | 68.8 | Plus |
BS | 5142 | BS BS 5142bp | 2011..2112 | 594..696 | 153 | 63.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1589 | 569..645 | 144 | 66.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3346 | 601..668 | 142 | 67.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1130 | 588..661 | 140 | 67.6 | Plus |
rover | 7318 | rover ROVER 7318bp | 1224..1294 | 567..633 | 130 | 67.6 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 518..568 | 594..644 | 129 | 72.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3351 | 595..661 | 128 | 65.7 | Plus |
BO20657.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:45 Download gff for
BO20657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34386-RC | 219..1727 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:35 Download gff for
BO20657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34386-RC | 219..1727 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:29 Download gff for
BO20657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34386-RC | 219..1727 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:29 Download gff for
BO20657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18062922..18062939 | 17..34 | 100 | -> | Plus |
2R | 18089962..18090665 | 35..738 | 100 | -> | Plus |
2R | 18092552..18092798 | 739..985 | 100 | -> | Plus |
2R | 18092863..18093066 | 986..1189 | 100 | -> | Plus |
2R | 18093129..18093464 | 1190..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:35 Download gff for
BO20657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13950427..13950444 | 17..34 | 100 | -> | Plus |
arm_2R | 13977467..13978170 | 35..738 | 100 | -> | Plus |
arm_2R | 13980057..13980303 | 739..985 | 100 | -> | Plus |
arm_2R | 13980368..13980571 | 986..1189 | 100 | -> | Plus |
arm_2R | 13980634..13980969 | 1190..1527 | 99 | | Plus |
BO20657.pep Sequence
Translation from 16 to 1543
> BO20657.pep
MCSKALLLLAVILAARCFGSGSSRRTLAMACEETMESTPGLKNNRYGYRS
ATDNNYNDYNYKWEHGDVDVDGIADSNEDDNNDNYNYNKAPAKWQQQQQQ
KLYGNPIHSIYDRQQHLQRQQQQQHEQQQQQQHQQQQLEQQQQGLGMEMG
LGQFDDDPENARNDFRLQLSDLNAAVQGMGRFAVTQDQNKDQDNSNSNSN
SNGNSNSIIKDNSNIDWLQPMEEQEQLLLERRSRSSNINQRSAMDEAGGA
GEPGQPEYTNNELPSGGLDDVDIEGEEDYAGQEEDADELSSQMPYGIQNV
RKRRVRSVMPPVPFLGPNPSSDGVVTYQSLCPTNRVTVKLESGDYRPNHY
VEVTCAHNYSPQPSRNYNYEYGYRGNELLRALLSERSEKREICSATGFSC
IQLNRTIHLIRLNDASGCWESETRTVPSGCECMWPKHSYGDIAFYHQAQK
RRAGVSSLRPHAPINVDYKPGVGYRQLTLRTRNPKPAPRSRREDMGYESS
DFNASFLDH
BO20657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34386-PD | 503 | CG34386-PD | 1..503 | 1..503 | 2699 | 100 | Plus |
CG34386-PC | 503 | CG34386-PC | 1..503 | 1..503 | 2699 | 100 | Plus |
Clk-PH | 895 | CG7391-PH | 623..782 | 82..229 | 160 | 29.7 | Plus |
Clk-PG | 895 | CG7391-PG | 623..782 | 82..229 | 160 | 29.7 | Plus |
Clk-PF | 961 | CG7391-PF | 689..848 | 82..229 | 160 | 29.7 | Plus |