Clone BO20658 Report

Search the DGRC for BO20658

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG13408-RA
Protein status:BO20658.pep: Imported from assembly
Sequenced Size:805

Clone Sequence Records

BO20658.complete Sequence

805 bp assembled on 2009-05-13

GenBank Submission: KX799956

> BO20658.complete
GAAGTTATCAGTCGACATGTGTGTGAGAAGCTCACTGGGCAGTGTGATTT
TAATTTACTTTGTCATCTTGCTTCGTTTGGTCAACTTGGTGCTGGCCCAG
AACGAAGGGAATATATCGGAATCGACGGTGGCCACGGGCCGCGAGGAGTG
CGGCAGCACGCAGAAAATGGTGGACGAGTGCTTCAAGGATCTGCCGCCGC
ATCTAATGGATTTCCTACAGAACACGAAAATCGTCATCAGCAAAAAGGAG
ATCACCGCCAAGTGCAACATATTCAACCGTGGCATGAGGTGCTTCGATAC
TTACTCCAAGCGTTGCCTGGACGATCGAAAGATGGGCACGTTTAAGAATA
ATGTGGAGGGAGCTCGGCGATTTTTCTACAAGTTCTGCGGCGACGCCGAT
TTTCAGCGTGACTATCTGAGGCACAAGGACTGCTTTGCATACATCCAACT
GGACTGGGTCACCTGCACCACCGAGTTCGAGAACATCCTTAGTGAAGAGG
TGCACGACGAAAGGCGCAACGCCAGCGAAAAGTTCCTCGAATTCTGCTGT
GCCCGCTACGCGTACGAGAACTGCATCTACAACAGTGCCCGCTTCAAGTG
CTACAAAAACTCGGCGGAGTTTGCCCGCGAGACGGCCAAAATGCTGTCGG
ATGAGAAGCACTTTAGGAACTGTGCCGTCCTCCAGAACATCTGTGCCCAC
GACGCCGCCGTGGCATTGGCCCAGTGGCACTGGATGGCGACGCCGATGAT
GCTGCTCCTGATGCGGCTGGTGGTGCGGATCTGGGCGGCAAGCTTTCTAG
ACCAT

BO20658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-RA 774 CG13408-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-RA 1189 CG13408-RA 81..851 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22080462..22080712 17..267 1255 100 Plus
3R 32079331 3R 22082897..22083135 549..787 1195 100 Plus
3R 32079331 3R 22081802..22081949 263..410 725 99.3 Plus
3R 32079331 3R 22082248..22082387 410..549 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:03:16 has no hits.

BO20658.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:01 Download gff for BO20658.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 1..771 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:19 Download gff for BO20658.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 81..851 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:42 Download gff for BO20658.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 81..851 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:42 Download gff for BO20658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22080462..22080712 17..267 100 -> Plus
3R 22081807..22081949 268..410 100 -> Plus
3R 22082249..22082387 411..549 100 -> Plus
3R 22082898..22083135 550..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:19 Download gff for BO20658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17906184..17906434 17..267 100 -> Plus
arm_3R 17907529..17907671 268..410 100 -> Plus
arm_3R 17907971..17908109 411..549 100 -> Plus
arm_3R 17908620..17908857 550..789 99   Plus

BO20658.pep Sequence

Translation from 16 to 805

> BO20658.pep
MCVRSSLGSVILIYFVILLRLVNLVLAQNEGNISESTVATGREECGSTQK
MVDECFKDLPPHLMDFLQNTKIVISKKEITAKCNIFNRGMRCFDTYSKRC
LDDRKMGTFKNNVEGARRFFYKFCGDADFQRDYLRHKDCFAYIQLDWVTC
TTEFENILSEEVHDERRNASEKFLEFCCARYAYENCIYNSARFKCYKNSA
EFARETAKMLSDEKHFRNCAVLQNICAHDAAVALAQWHWMATPMMLLLMR
LVVRIWAASFLDH

BO20658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-PA 257 CG13408-PA 1..257 1..257 1381 100 Plus
CG9896-PA 253 CG9896-PA 23..195 36..205 169 23.7 Plus