BO20663.complete Sequence
1486 bp assembled on 2009-05-13
> BO20663.complete
GAAGTTATCAGTCGACATGATGTGGCGCCAGCAGGCGAACATCGACCCCA
ATGAGGATCCTGCCGAGGCATCACATGCTGTGCACGGCATTAATCAACAA
TCGCTGCAAAAGTTTGCAACATGCCTGCAACATATTTCCCAATTACTGGA
GTGTCCTGTGTGCCTTGAGGTCATCAAACCACCTGGCTGGCAGTGCTGCA
ATGGACACGTGCTCTGCAATAATTGCCGCAGTCGCTCCGTAAAGTGTCCC
GTGTGCCGAGTTCCTTTGGGGCCGAGAGGCCGCTGTCTGCTGTCGGACAA
ACTGTTCACCCTGCTGGCGGAGAGTTTCCCCTGCGATGGCGGGAAAACCA
ACAAGGTGGCTGCCTCCCAGGGCCATGGAAAGCTGAGCAGCGTCAACAAG
TGCACAAATGAATATCATAATCAACCGAAAATGGCGCTGGCGAAGACGAG
TTCCGGCAAGTCCAAGTGCGGCAAGCAAATCTCCAGGCAACTCGAAACAG
TTTTGGTGGACCAAAGTCCTCGGGAAATCAGAAGAAAGAGTCAGCAGGGG
CAGGAGCAGGAGCAGGCGGTGCAGGAGGCTGTCCTGCCACGTTGCACGCT
GATAAAAGTGCAGCATCAGGAGGCCGCTGTCGAGCACTTTTCGGAGGAAG
GTCACAACAATATGCTCGTTAAACCAAAGTTAAAGTTGAGTAAGAAAAGT
TGGCGGATTACTGGGCCAGATCAAGACGGATTGCGCTGCGATGAAGTTGC
CACCATAAATAATGGTGTCCAGGTGCAGGAGCAACAGCAGCAGCAGGAGC
GGCAGCAGCTGGGGCATGAGAAGTCAGCAAGCAGCGAGAGCGAGTATCAA
AATTATCATTGCCCAACTGGGAAATCATGCAGCAGCCACAGTTACCAACT
TGGCCAGCCAGTGGCCAACAAATTGTCAACAGTCGCGATGCAGGCGCTGG
CGGTGGTTGAGAACTCGGGAGGTGCATCCTTATCAGCGGGGAGCCATAAA
CAGGCGCCGGCAGCCGGAGTAAATCAGGAGCTGCCACTGGAGGCGGGGTC
AATAGGTCGGCGGGAATGGCAGTTGTTGCGACATTTGAGCGGCGACCACC
GGCTGGCAGTGTTGCAAATCTACGGCACGTTCGGCGAACGCTTGCACGTC
CGCCCCCAGCTGCCCCTGGAGGGCGTGGCCTGCCTGCGGCTGAGCGAGGA
GTCCTCCACTTTTGGCCACGTCAGAGTGCACACATTTTTCTTGGCTGTCA
TTGCGATCGGCGGCGGCGATGAGCACGCCGTCTTCCTGTGGCACCTAGAC
CACCTGCCACATGGACCCACTTTCGAGACTGTCATCGAGACTCCGGGCCA
CCGATTCCTGGGACCTGCTCACTCGCTCCGGTGCAGCTGGCCGGAGATTA
GGGCATCCGGCCAGTTCCTCACCCTCCGCAATCTGGCTGCCAAGTGCGAG
GTGACCATCAAAAGCAGGGCAAGCTTTCTAGACCAT
BO20663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34375-RA | 1704 | CG34375-PA | 250..1701 | 17..1468 | 7260 | 100 | Plus |
| CG34375-RC | 1707 | CG34375-PC | 250..1704 | 17..1468 | 7195 | 99.8 | Plus |
| CG34375-RB | 1707 | CG34375-PB | 250..1704 | 17..1468 | 7195 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34375-RA | 2218 | CG34375-RA | 451..1902 | 17..1468 | 7260 | 100 | Plus |
| CG34375-RC | 2070 | CG34375-RC | 300..1754 | 17..1468 | 7195 | 99.8 | Plus |
| CG34375-RB | 2221 | CG34375-RB | 451..1905 | 17..1468 | 7195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23000455..23001582 | 1468..341 | 5640 | 100 | Minus |
| 3R | 32079331 | 3R | 23002841..23003015 | 342..168 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 23006593..23006682 | 171..82 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 23008002..23008067 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 4290..4374 | 506..586 | 119 | 62.4 | Plus |
BO20663.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:57 Download gff for
BO20663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1902 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:55 Download gff for
BO20663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1902 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:20 Download gff for
BO20663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34375-RA | 451..1902 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:20 Download gff for
BO20663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23006595..23006681 | 83..169 | 100 | <- | Minus |
| 3R | 23008002..23008067 | 17..82 | 100 | | Minus |
| 3R | 23000453..23001581 | 342..1470 | 99 | <- | Minus |
| 3R | 23002842..23003013 | 170..341 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:55 Download gff for
BO20663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18828564..18828735 | 170..341 | 100 | <- | Minus |
| arm_3R | 18832317..18832403 | 83..169 | 100 | <- | Minus |
| arm_3R | 18826175..18827303 | 342..1470 | 99 | <- | Minus |
| arm_3R | 18833724..18833789 | 17..82 | 100 | | Minus |
BO20663.pep Sequence
Translation from 16 to 1486
> BO20663.pep
MMWRQQANIDPNEDPAEASHAVHGINQQSLQKFATCLQHISQLLECPVCL
EVIKPPGWQCCNGHVLCNNCRSRSVKCPVCRVPLGPRGRCLLSDKLFTLL
AESFPCDGGKTNKVAASQGHGKLSSVNKCTNEYHNQPKMALAKTSSGKSK
CGKQISRQLETVLVDQSPREIRRKSQQGQEQEQAVQEAVLPRCTLIKVQH
QEAAVEHFSEEGHNNMLVKPKLKLSKKSWRITGPDQDGLRCDEVATINNG
VQVQEQQQQQERQQLGHEKSASSESEYQNYHCPTGKSCSSHSYQLGQPVA
NKLSTVAMQALAVVENSGGASLSAGSHKQAPAAGVNQELPLEAGSIGRRE
WQLLRHLSGDHRLAVLQIYGTFGERLHVRPQLPLEGVACLRLSEESSTFG
HVRVHTFFLAVIAIGGGDEHAVFLWHLDHLPHGPTFETVIETPGHRFLGP
AHSLRCSWPEIRASGQFLTLRNLAAKCEVTIKSRASFLDH
BO20663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34375-PA | 567 | CG34375-PA | 84..567 | 1..484 | 2574 | 100 | Plus |
| CG34375-PC | 568 | CG34375-PC | 84..568 | 1..484 | 2562 | 99.8 | Plus |
| CG34375-PB | 568 | CG34375-PB | 84..568 | 1..484 | 2562 | 99.8 | Plus |
| CG6688-PA | 424 | CG6688-PA | 127..201 | 29..104 | 192 | 48.7 | Plus |
