Clone BO20666 Report

Search the DGRC for BO20666

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG18518-RA
Protein status:BO20666.pep: Imported from assembly
Sequenced Size:1030

Clone Sequence Records

BO20666.complete Sequence

1030 bp assembled on 2009-05-13

GenBank Submission: KX799585

> BO20666.complete
GAAGTTATCAGTCGACATGAGTTCCAAAAAGAATATAACTCCACCAAACA
ATTCAGCCGATAAGGAAACGGATCGCAAAATCCCCGAAGAGTCTCTATCA
ATCACTAACCATCCGGGGGCCACATCAACGCCAACTTATATGACACGCAA
ACGGCAGAGGCTTTTATCTCTCCAGATGGATTCTGCATTGTCATTGTCAT
TGGTGGATCGAGTTCCACAAACATTCGAGGATATTCGTGGACGAAAGGGT
ATTCGTGATGCCAGTTCTCCAAAAACTGGTAAACTCCCAAGGACTAAAGC
CCGGAATATACCGAAAACACCAGCGCGTGTTTCCCCAAGTATAAATCATG
GTAGGAATTCTGCTAAGCCAAAGACCCCAGCTAAAAAGAAGACTACGGAG
AAAACTCCTGCGAAGACGCCCACAGACACGCCGAAAATATCGCCAAAAAA
TACGCGACAAATATCGCCGAACAAGTCGCCAAAAACTTTCTCGATGATGC
AAAATGTTCCAGCAAAAAAATCACCAATAAAATCATTAATAAAGAAGCCG
AAAACGCCAGCAGTGAAATCACCAATTGAACCCATTATATTACCAACAGA
GTCCCAATTGAAATCTCCGATAAAGTTATCAATTTCGCCAACGAAATCAT
CAATGATGTCAACGATTTTGACAAAGCAGTCGGTGAAGTCCGAAAAGAAT
TCCCCTGAAGCCCATTTCTCTGGAGAAGTAACCAATAAGGAAAATGCCGC
TGAAGAAGATATTTCGGAGCCACCTTCAAAACAGCCTCGTCTACATATTT
TGCAAGTCAATTTGGGGTCCCCATTCGCAATGACGCACAGCAAAAAACTG
AAAGTAATTGCAGTAGATTCCAATGATGAAAATCAGGAAGCAAAAGAAGC
ACCTCCTGACAATTTAAGCGAAATCAACACAAGTGAGGAAATGAAGTCCT
TCGAAATCAAAAATTCTTTTAAAAATGAGATAGAAAAATCGGACAAAAAT
TGTTTTATTTCGGCAAGCTTTCTAGACCAT

BO20666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-RA 999 CG18518-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-RA 1090 CG18518-RA 51..1046 17..1012 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15834613..15835608 1012..17 4980 100 Minus
Blast to na_te.dros performed 2014-11-27 13:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 6631..6752 434..554 112 55.7 Plus

BO20666.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:55 Download gff for BO20666.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..996 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:05 Download gff for BO20666.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 51..1046 17..1014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:32 Download gff for BO20666.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 51..1046 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:32 Download gff for BO20666.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15834611..15835608 17..1014 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:05 Download gff for BO20666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15834611..15835608 17..1014 99   Minus

BO20666.pep Sequence

Translation from 16 to 1030

> BO20666.pep
MSSKKNITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLL
SLQMDSALSLSLVDRVPQTFEDIRGRKGIRDASSPKTGKLPRTKARNIPK
TPARVSPSINHGRNSAKPKTPAKKKTTEKTPAKTPTDTPKISPKNTRQIS
PNKSPKTFSMMQNVPAKKSPIKSLIKKPKTPAVKSPIEPIILPTESQLKS
PIKLSISPTKSSMMSTILTKQSVKSEKNSPEAHFSGEVTNKENAAEEDIS
EPPSKQPRLHILQVNLGSPFAMTHSKKLKVIAVDSNDENQEAKEAPPDNL
SEINTSEEMKSFEIKNSFKNEIEKSDKNCFISASFLDH

BO20666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-PA 332 CG18518-PA 1..332 1..332 1684 100 Plus