Clone BO20667 Report

Search the DGRC for BO20667

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG30053-RA
Protein status:BO20667.pep: Imported from assembly
Sequenced Size:1039

Clone Sequence Records

BO20667.complete Sequence

1039 bp assembled on 2009-05-13

GenBank Submission: KX798821

> BO20667.complete
GAAGTTATCAGTCGACATGGCGGAGGAGCTAAAAGTGTTCTTCGAAGAGT
GTCGTGGACAAGGGTTTTCCGCAAAGGAAATGCTGGCTGTATGTCAACCT
TTGATTTGGAGAATCCGCTTGGCTCGAATCAAGAAATGGTTCTTCATCCT
ACTGCCCCTGATGGTTATTTATCTGCTTTGGCTATGCAGTGACACCTTTT
CTTGGTGGCTAAGTGCCCTGGGTCGATTGGTGCTCATACAGATCCTTCCA
CTCTGGGATTGGCGGCCCTACTATCATGCCAAGTGCCTGATACCACGCGA
TCAAAGTGTCCAAGAGCAGGCACCATCATTGGGTAAAGCGGAGACCTTGC
GGCAGAATTGCGATCTCTGTGAAGGTTTGGAGGGAATAGGCACGGTTTCC
AATGTAAGCTACTCCTCCTTGGAGTCTGAGCACCTAGAACGTGGGCAACC
AGTGATTATAACAGACACTGGACTGCAAACGGATGTTTTTAGTCTCCTAG
AGCAAATAGAGAAGAAGTCACCTCAGTGGCTAACCAGTGAACCTTGTGAT
GTTTCCAGCAATCTGTTGCTGAGGAAACTTTTTAACCTAGAGGCGGCTCT
GGATAAGATTCATTCCTGGCAGGGACAGACATCGAATTCTTGGCACCTTC
AACTGAGGAACTGCCAGAAGAAGGCGGTGAAGTCCTCTCGGCTTTTTCTG
GATCGTCCCTACTACTACCCACTTCACCTGGCCCCGTATTACTCCAGCTG
GCTATTGGCAGTCCATCAGCAAAAGCGAAACCAAGCCGATATATACGTGC
GTGGCCTAGTGCTCATCCAGCAACTGAGTGGCCACTTTGAGATGGTTCTC
CATCCAAAGAAGCCCTGCAATAAAGGAATATGTCCAAGCTTGCGGATGCG
ACTGAATGCAGGAGAAGGTCTGATCTTTACCACGGATATCTGGAGCCTAA
GTTATGGTCTGGAGAAACCCCACGGAAAGCTGACCTCCCTGGCTAGCATT
TTCGAGATAGACTGGCAGCCGGCAAGCTTTCTAGACCAT

BO20667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30053-RA 1008 CG30053-PA 1..1005 17..1021 5010 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30053-RA 1088 CG30053-RA 17..1023 15..1021 5020 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12688798..12689439 1021..380 3210 100 Minus
2R 25286936 2R 12689495..12689860 380..15 1815 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 20:52:14 has no hits.

BO20667.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:55 Download gff for BO20667.complete
Subject Subject Range Query Range Percent Splice Strand
CG30053-RA 1..1005 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:59 Download gff for BO20667.complete
Subject Subject Range Query Range Percent Splice Strand
CG30053-RA 19..1023 17..1023 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:59 Download gff for BO20667.complete
Subject Subject Range Query Range Percent Splice Strand
CG30053-RA 19..1023 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:59 Download gff for BO20667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12688796..12689438 381..1023 99 <- Minus
2R 12689495..12689858 17..380 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:59 Download gff for BO20667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8576301..8576943 381..1023 99 <- Minus
arm_2R 8577000..8577363 17..380 99   Minus

BO20667.pep Sequence

Translation from 16 to 1039

> BO20667.pep
MAEELKVFFEECRGQGFSAKEMLAVCQPLIWRIRLARIKKWFFILLPLMV
IYLLWLCSDTFSWWLSALGRLVLIQILPLWDWRPYYHAKCLIPRDQSVQE
QAPSLGKAETLRQNCDLCEGLEGIGTVSNVSYSSLESEHLERGQPVIITD
TGLQTDVFSLLEQIEKKSPQWLTSEPCDVSSNLLLRKLFNLEAALDKIHS
WQGQTSNSWHLQLRNCQKKAVKSSRLFLDRPYYYPLHLAPYYSSWLLAVH
QQKRNQADIYVRGLVLIQQLSGHFEMVLHPKKPCNKGICPSLRMRLNAGE
GLIFTTDIWSLSYGLEKPHGKLTSLASIFEIDWQPASFLDH

BO20667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30053-PA 335 CG30053-PA 1..335 1..335 1794 100 Plus