BO20677.complete Sequence
1792 bp assembled on 2010-10-20
GenBank Submission: KX798933
> BO20677.complete
GAAGTTATCAGTCGACATGGCGGCGTTGGAACATCCGGATGCCATGCTGC
CATACTCCAAATTGTTGTCAACAGCCCTCACTGTGGCCAGTGGTAACTCG
AACTCCTCCGATGGTACTTTGCTGCTCATCCAGACCAGTGCGGCACCAGG
TGGCGATGTGATGGCCACCGGAGCCGGAGCCGGAAAGTTGGGTGTGCCCT
CGATGAACTCGTACCTGGTGAGCATGGCGTGGCCCAAGTCGCTGGCAGTG
GCCGTCTTCCTGGTCATCATCCTGGTCACCGTGGTGGGCAACACACTCGT
CATCCTCGCCGTTCTGACCACACGCCGCCTGCGCACCGTAACCAACTGTT
TCGTGATGAACTTGGCCATCACCGACTGGCTGGTCGGCACCTGCGTGATG
CCTCCATCGGTGGTGCTCTACATAACAGGCACTTGGCGCTTTGGCTGGAT
ACTGTGCGACATTTGGATCTCGCTGGACATCCTGCTCTGCAGCGGCTCCA
TCCTCAGCCTGTGCGCCATCAGTCTGGACAGGTATCTCGCCGTCACACAA
CCACTGACGTACTCCAAGAAGCGCCGATCCAAGCGACTGGCCCTCCTCAT
GATTCTCGTCGTGTGGATAACTGCCCTGTCAATCACATGTCCACCCTATT
TGGGCTGGTACGAGGTCGGTCGGCACCAGGCGGAGTTCGTGGACTGCCGC
TACAACCAAAACAAGGGCTACGTGGTCTTCTCGGCGATGGGATCGTTCTT
CATTCCCCTCACCGTGATGCTCTACGTTTACGTGAAGATTGGTTATGTCC
TCACGTCACGGCGACAGCGCATTGTGCGCGATGCGTACTCGGAGCGCACG
GCAGACTACGATGTGGATGGGGACAACTTCATCTCGGAGTCGGAGCACTA
TCATTGCACGCCAACCAAGTGGCTGCCGAACAGGAAGTCCCGCTGGAGGT
TCAACTCCCTGCACGACCCACCACCCAGCGCCGCCACGAATGCAGCAGCG
AAGGGACACCAGTCGTCCGTCAAGTGCTCCAAGTGCTCCAAGTGCTCCTC
TGCCACTGGAACTGCTGGAGCTGGAGCTGGAGCTGGTGTGGTAGACAAAA
CGCTGACGTTCAAACATCAGCCCACCTTTTACGAGCTGGTCGAGGTGTCG
CGTCTCTCGTCGCTCATTCACTGCTCGGCAATTAGCTGCAAGTATGGAGG
ACCCTGCATGCACTCCACGCCCTCGGGCATGCACTACGTTGGCACGGAGG
CCTCCTTCTCGGACACCTGCCTGGGTGGCAATGTGAGCAACAACACCACC
ACCACCACCACCAACACCGTCGCACTGGAAACCAACGAGAAACTGGAGGC
GGAGGCCAAGCAAAAGCAACAGCAGCAACGATCCTCCTTCGACCACCATC
ACCCGCATGCACACCATCATGGCTCCCATGGCCAGCAGAGCCATCACAAT
CATCACCATCGCATGCCGATGCGAGTTTCGACCACGAAACGTGATAGCAA
GACCGCCAAGACCCTGACTATTGTGATGGGCGGCCTAATTGCTTGCTGGC
TGCCCTTCTTCGTCTATTATCTGCTGATACCCTTCCTGCCGCGACCCGCC
GTCCTCGAGGACCTCATGTTCGGCTTCACCTGGATTGGCTGGGTCAACTG
CGCCATCAACCCGTTCATCTACGCCTTCTACAATCCGGACTTTCGCACTG
CCTTCTGGCGGCTCACCTGTCGCCCCATTTGCAAGCAGAAGCGTCCGCCC
AACCACCTGGCCATGTTCCGTGGCGCAAGCTTTCTAGACCAT
BO20677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TyrRII-RD | 1761 | CG16766-PD | 1..1758 | 17..1774 | 8790 | 100 | Plus |
| TyrRII-RC | 1761 | CG16766-PC | 1..1758 | 17..1774 | 8790 | 100 | Plus |
| TyrRII-RB | 1761 | CG16766-PB | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TyrRII-RD | 4089 | CG16766-RD | 768..2536 | 6..1774 | 8800 | 99.8 | Plus |
| TyrRII-RC | 2812 | CG16766-RC | 768..2536 | 6..1774 | 8800 | 99.8 | Plus |
| TyrRII-RB | 2313 | CG16766-RB | 130..1898 | 6..1774 | 8800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17744978..17745917 | 835..1774 | 4700 | 100 | Plus |
| 3R | 32079331 | 3R | 17739924..17740347 | 6..429 | 2075 | 99.3 | Plus |
| 3R | 32079331 | 3R | 17744122..17744300 | 657..835 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 17741708..17741839 | 529..660 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 17741003..17741110 | 426..533 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 17755180..17755270 | 533..443 | 260 | 85.7 | Minus |
| 3R | 32079331 | 3R | 17752181..17752274 | 1719..1626 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:26:26 has no hits.
BO20677.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:52 Download gff for
BO20677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 1..1758 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:52 Download gff for
BO20677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 342..2099 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:08 Download gff for
BO20677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RB | 141..1898 | 17..1776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:08 Download gff for
BO20677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17744123..17744300 | 658..835 | 100 | -> | Plus |
| 3R | 17739935..17740346 | 17..428 | 100 | -> | Plus |
| 3R | 17741006..17741108 | 429..531 | 100 | -> | Plus |
| 3R | 17741711..17741836 | 532..657 | 100 | -> | Plus |
| 3R | 17744979..17745917 | 836..1776 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:52 Download gff for
BO20677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13565657..13566068 | 17..428 | 100 | -> | Plus |
| arm_3R | 13566728..13566830 | 429..531 | 100 | -> | Plus |
| arm_3R | 13567433..13567558 | 532..657 | 100 | -> | Plus |
| arm_3R | 13569845..13570022 | 658..835 | 100 | -> | Plus |
| arm_3R | 13570701..13571639 | 836..1776 | 99 | | Plus |
BO20677.pep Sequence
Translation from 16 to 1792
> BO20677.pep
MAALEHPDAMLPYSKLLSTALTVASGNSNSSDGTLLLIQTSAAPGGDVMA
TGAGAGKLGVPSMNSYLVSMAWPKSLAVAVFLVIILVTVVGNTLVILAVL
TTRRLRTVTNCFVMNLAITDWLVGTCVMPPSVVLYITGTWRFGWILCDIW
ISLDILLCSGSILSLCAISLDRYLAVTQPLTYSKKRRSKRLALLMILVVW
ITALSITCPPYLGWYEVGRHQAEFVDCRYNQNKGYVVFSAMGSFFIPLTV
MLYVYVKIGYVLTSRRQRIVRDAYSERTADYDVDGDNFISESEHYHCTPT
KWLPNRKSRWRFNSLHDPPPSAATNAAAKGHQSSVKCSKCSKCSSATGTA
GAGAGAGVVDKTLTFKHQPTFYELVEVSRLSSLIHCSAISCKYGGPCMHS
TPSGMHYVGTEASFSDTCLGGNVSNNTTTTTTNTVALETNEKLEAEAKQK
QQQQRSSFDHHHPHAHHHGSHGQQSHHNHHHRMPMRVSTTKRDSKTAKTL
TIVMGGLIACWLPFFVYYLLIPFLPRPAVLEDLMFGFTWIGWVNCAINPF
IYAFYNPDFRTAFWRLTCRPICKQKRPPNHLAMFRGASFLDH
BO20677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TyrRII-PD | 586 | CG16766-PD | 1..586 | 1..586 | 3137 | 100 | Plus |
| TyrRII-PC | 586 | CG16766-PC | 1..586 | 1..586 | 3137 | 100 | Plus |
| TyrRII-PB | 586 | CG16766-PB | 1..586 | 1..586 | 3137 | 100 | Plus |
| TyrRII-PA | 586 | CG16766-PA | 1..586 | 1..586 | 3137 | 100 | Plus |
| TyrR-PC | 631 | CG7431-PC | 108..611 | 66..569 | 1070 | 43.4 | Plus |
