BO20684.complete Sequence
1582 bp assembled on 2010-10-20
GenBank Submission: KX794715
> BO20684.complete
GAAGTTATCAGTCGACATGGCAAAGCCAAAAGTCGGCGAATCGCTTCAGG
AGCAATCATTAACGTTCTCAGAGGCGCCGCTAATGGCACACGAAAATGGC
AAGCAGGAGGAGCGGCCCCAGTGGAGCTGGTCCCTCAATTGGGCGGCAAT
CGGATCGTCGCTTGGTGCGGCGGTTCCCGTGGGCTATTGCACAGGAGTGA
TGAATAGTCCCGCTGAACTCATGCGCTCCTGGTGCAACGAGACACTGATT
GCCAGCTATGACCTGAACTTAAGTGATGCGGGGTTGGAAATACTGTGGTC
TGCCATAGTCTCCATATTCCTCGTTGGAGGCGCCATTGGATCAGTTGTTG
GAGCCACCATGGCCAATCGGTTCGGACGTCGCGGCTGCTTCTTCATCTGT
GGCCTCCTTCTGGGTCTGGGAGCCATTAGCTTTTACGCATGTCGACCGTT
GCGTTCCGTGGAGCTCCTTCTGCTGGGTCGGATGATGGTTGGTCTGGCCG
GCGGTCTGCTAACATCCTTTATGTCCATGTGGCACAGCGAAATCTCGGCT
CTCTCCCAGCGCAGCACCTTGGCTCCCCTCTGTCCAATGGGCTTGACCTT
GGGGGTGGTGATTGCGCAGGTCTGCAGCCTGCGCTCGGTGCTTGGAGGTC
CTGAGAACTGGCACTTCGGCCTCGCATTCTACGGTCTTCTCGTGCTTGTG
TGTTATGCACCTTTTAGGTGGTATCCTGAGAGCCCCAAGTGGTTGTTCAT
CGTCCAAGGTCGTAAGGAGGATGCTCGTCGCCAGCTTCAGCTACTAAGGG
GTTACACGGCTGGCAGCGCCGCACTGAAGGCCGAGATGGAAGAGATGGAG
CAGGAATCTGCTTGCGAGGTGAAGACCAGCAGTTTGATGCAGGTCCTGCG
TGACCCCCAATTGCGACTTCCGCTGATCATCGTCTGCGCCTTTCTTGGTG
GCCAACAGCTGTCTGGCATTAATGCTATATTTTACTACTCCGTCTCCATT
TTCCGAAAGGCGGGTCTTTCCAGTCAGGCTTCTGAGTGGGCCAACCTAGG
TGCGGGTTCCCTCAATTTGTTCGCCTCCATGCTGGGCCCCGTGCTGCTGG
AACGAGTCAATCGCCGACCACTGATGCTTTTCTCCACATTCTTCTGCGCA
GTCTTTCTGCTTTTGTTTGCCATAATGCTCTTCTTCATCGAGAGCTACAG
CTGGTTTGGTATGGGCTGCATTGGCTGCATTTTCCTGTACATTTTCTTCT
TCCAATTTGGTCTGGGCCCAATGCCGTTCTTCATCGGAGCAGAACTGTTT
GAACTGGCTACCCGTCCAGCCGCCATGTCGTTGGGAAGCTTGGCGTACTG
GCTGTGCAACTTTATTATCGGAATGGCGTTCCCCACGATGCAGAACCTCT
GGGGCGCCTTAGTTTTTTTGCCCTTCTCGGTGACCTGCCTCCTGATATTT
GGCCTGACGAAACGCTACTTGCCAGAGACGCGAGGACGCCATCCCTCAGA
GGTGGCTCCTCTCGTCGCTTTGGGTTTTAAATCAAAGGTGATGCTCCCGA
AGCAGATGTCCATTGCAAGCTTTCTAGACCAT
BO20684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7882-RC | 1551 | CG7882-PC | 1..1548 | 17..1564 | 7740 | 100 | Plus |
| CG7882-RA | 1551 | CG7882-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
| sut1-RA | 1524 | CG8714-PA | 1177..1493 | 1199..1515 | 430 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7882-RC | 2266 | CG7882-RC | 253..1800 | 17..1564 | 7740 | 100 | Plus |
| CG7882-RA | 1802 | CG7882-RA | 155..1702 | 17..1564 | 7740 | 100 | Plus |
| sut1-RA | 2412 | CG8714-RA | 1494..1810 | 1199..1515 | 430 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5958185..5958943 | 218..976 | 3795 | 100 | Plus |
| 2R | 25286936 | 2R | 5959443..5959717 | 1290..1564 | 1375 | 100 | Plus |
| 2R | 25286936 | 2R | 5959006..5959219 | 977..1190 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 5958016..5958129 | 104..217 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 5959277..5959379 | 1190..1292 | 515 | 100 | Plus |
| 2R | 25286936 | 2R | 5957873..5957963 | 17..107 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 8086323..8086549 | 1289..1515 | 325 | 76.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:49 has no hits.
BO20684.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:46 Download gff for
BO20684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 1..1548 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:39 Download gff for
BO20684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 155..1702 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:39 Download gff for
BO20684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 155..1702 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:39 Download gff for
BO20684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5959277..5959379 | 1190..1292 | 100 | -> | Plus |
| 2R | 5957873..5957962 | 17..106 | 100 | -> | Plus |
| 2R | 5958019..5958129 | 107..217 | 100 | -> | Plus |
| 2R | 5958185..5958943 | 218..976 | 100 | -> | Plus |
| 2R | 5959006..5959218 | 977..1189 | 100 | -> | Plus |
| 2R | 5959446..5959717 | 1293..1566 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:39 Download gff for
BO20684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1846951..1847222 | 1293..1566 | 99 | | Plus |
| arm_2R | 1845378..1845467 | 17..106 | 100 | -> | Plus |
| arm_2R | 1845524..1845634 | 107..217 | 100 | -> | Plus |
| arm_2R | 1845690..1846448 | 218..976 | 100 | -> | Plus |
| arm_2R | 1846511..1846723 | 977..1189 | 100 | -> | Plus |
| arm_2R | 1846782..1846884 | 1190..1292 | 100 | -> | Plus |
BO20684.pep Sequence
Translation from 16 to 1582
> BO20684.pep
MAKPKVGESLQEQSLTFSEAPLMAHENGKQEERPQWSWSLNWAAIGSSLG
AAVPVGYCTGVMNSPAELMRSWCNETLIASYDLNLSDAGLEILWSAIVSI
FLVGGAIGSVVGATMANRFGRRGCFFICGLLLGLGAISFYACRPLRSVEL
LLLGRMMVGLAGGLLTSFMSMWHSEISALSQRSTLAPLCPMGLTLGVVIA
QVCSLRSVLGGPENWHFGLAFYGLLVLVCYAPFRWYPESPKWLFIVQGRK
EDARRQLQLLRGYTAGSAALKAEMEEMEQESACEVKTSSLMQVLRDPQLR
LPLIIVCAFLGGQQLSGINAIFYYSVSIFRKAGLSSQASEWANLGAGSLN
LFASMLGPVLLERVNRRPLMLFSTFFCAVFLLLFAIMLFFIESYSWFGMG
CIGCIFLYIFFFQFGLGPMPFFIGAELFELATRPAAMSLGSLAYWLCNFI
IGMAFPTMQNLWGALVFLPFSVTCLLIFGLTKRYLPETRGRHPSEVAPLV
ALGFKSKVMLPKQMSIASFLDH
BO20684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7882-PC | 516 | CG7882-PC | 1..516 | 1..516 | 2684 | 100 | Plus |
| CG7882-PA | 516 | CG7882-PA | 1..516 | 1..516 | 2684 | 100 | Plus |
| sut1-PA | 507 | CG8714-PA | 31..506 | 32..508 | 1474 | 58.5 | Plus |
| sut2-PA | 491 | CG17975-PA | 15..490 | 36..508 | 968 | 40.7 | Plus |
| sut3-PA | 476 | CG17976-PA | 8..475 | 36..508 | 899 | 40.6 | Plus |
