BO20685.complete Sequence
3130 bp assembled on 2010-10-20
GenBank Submission: KX794830
> BO20685.complete
GAAGTTATCAGTCGACATGTCCACATCCACCGCCACAACGAGCGTTATCA
CGTCCAACGAGCTCTCGCTGTCCGGCCACGCCCACGGTCACGGTCACGCC
CACCAGTTGCACCAGCACACCCACAGCCGCCTAGGAGTTGGCGTTGGTGT
TGGCATCCTTAGCGACGCATCCCTATCGCCCATCCAACAAGGCAGTGGCG
GCCACAGCGGCGGAGGTAACACAAACAGTTCACCACTGGCGCCCAACGGA
GTGCCACTTCTCACAACAATGCACCGATCACCGGACTCACCGCAGCCAGA
ATTGGCCACCATGACGAACGTCAACGTGCTGGATCTGCACACGGATAACT
CCAAGCTGTACGACAAGGAGGCTGTATTTATATACGAAACGCCCAAGGTG
GTGATGCCAGCGGATGGCGGGGGTGGCAATAATTCCGATGAAGGTCATGC
CATCGATGCGCGGATTGCGGCCCAAATGGGCAACCAAGCCCAGCAACAGC
AGCAGCAGCAACAGCAGACGGAACACCAGCCGCTGGCCAAGATCGAGTTC
GATGAGAACCAGATAATCCGGGTGGTGGGACCAAATGGCGAGCAACAGCA
AATCATCTCGCGGGAGATCATCAATGGGGAGCATCATATCCTGTCGCGAA
ACGAGGCTGGTGAGCACATTCTCACACGGATCGTCAGTGATCCCTCCAAG
TTGATGCCCAATGACAATGCAGTGGCCACGGCCATGTACAACCAGGCCCA
AAAGATGAACAATGATCACGGGCAGGCGGTATATCAGACATCACCATTGC
CGCTAGACGCGTCTGTATTGCATTATAGTGGCGGCAATGATTCGAATGTA
ATTAAGACGGAGGCCGATATCTACGAGGATCACAAGAAACATGCGGCTGC
AGCAGCAGCTGCTGCCGGCGGAGGATCCATCATATACACCACATCCGATC
CGAACGGAGTGAATGTGAAACAACTGCCCCATTTGACGGTACCCCAAAAA
CTTGATCCCGACCTCTATCAAGCCGATAAGCATATAGATTTGATCTACAA
CGATGGCAGCAAGACGGTGATTTACTCCACTACGGATCAGAAGAGTTTGG
AAATATACTCGGGCGGCGACATCGGCAGCCTGGTGTCCGACGGCCAAGTG
GTGGTCCAGGCGGGACTGCCGTATGCCACCACCACCGGAGCCGGCGGCCA
GCCCGTCTATATCGTGGCCGACGGTGCCTTGCCAGCGGGAGTCGAGGAGC
ATCTGCAGAGTGGAAAGCTCAATGGCCAGACCACACCTATCGATGTCTCT
GGCCTATCGCAAAATGAGATTCAAGGCTTTTTGCTCGGCTCACACCCCTC
GTCATCGGCGACGGTAAGCACAACCGGCGTTGTCTCCACGACAACGATCT
CGCATCACCAGCAACAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAG
CAGCAGCAACACCAGCAGCAGCAGCAACATCCCGGCGACATTGTTAGTGC
CGCTGGCGTGGGGAGCACGGGCTCCATTGTCTCCTCTGCGGCGCAACAGC
AGCAGCAGCAGCAACTAATTAGCATCAAACGAGAGCCCGAAGACTTGCGC
AAGGATCCCAAGAATGGCAACATTGCCGGTGCAGCAACAGCAAATGGACC
CGGTTCGGTCATAACCCAAAAGTCCTTTGATTATACGGAATTGTGCCAGC
CGGGCACGCTGATCGATGCCAATGGCAGCATACCCGTCAGCGTGAACAGC
ATCCAGCAGAGAACGGCGGTCCATGGCAGCCAGAACAGTCCCACCACATC
GCTGGTGGACACCAGCACCAATGGATCCACGCGATCGCGGCCCTGGCACG
ACTTTGGACGTCAGAATGATGCCGACAAAATACAAATACCAAAAATCTTC
ACAAACGTGGGCTTCCGATATCACCTGGAGAGCCCCATCAGTTCATCGCA
GAGGCGCGAGGACGATCGCATCACCTACATCAACAAGGGTCAATTCTATG
GAATAACGCTGGAGTATGTGCACGATGCGGAAAAGCCCATTAAGAACACC
ACCGTCAAGAGTGTGATCATGCTAATGTTCCGCGAGGAGAAGAGTCCCGA
GGATGAGATCAAGGCCTGGCAATTCTGGCACAGTCGTCAGCATTCCGTGA
AGCAGAGAATCTTGGATGCAGATACGAAGAACTCGGTTGGCCTCGTTGGC
TGCATCGAGGAAGTGTCGCACAATGCCATCGCCGTCTACTGGAATCCGCT
GGAGAGCTCCGCCAAGATCAACATTGCGGTTCAGTGCTTGAGCACGGATT
TCAGCAGTCAAAAGGGAGTTAAGGGCCTGCCGCTGCACGTACAAATCGAC
ACATTTGAGGACCCCAGAGATACGGCGGTCTTCCACCGCGGCTACTGTCA
GATAAAGGTCTTCTGCGATAAGGGCGCCGAACGAAAGACGCGCGATGAAG
AGCGGCGGGCCGCCAAACGAAAGATGACAGCCACGGGCAGAAAGAAGCTG
GACGAGCTTTACCATCCGGTAACGGATCGGTCCGAGTTCTATGGCATGCA
GGACTTCGCCAAGCCGCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGA
AGAGCTTCTACGGCCATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCA
CCGTTCCTGCTCCACGGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCA
CAACCATTTTCCGCCCGACATGCAGACCGATAAGAAGGATCACATACTGG
ACCAGAACATGTTGACCAGCACACCCCTGACCGACTTTGGTCCGCCGATG
AAGCGCGGCAGGATGACGCCGCCGACCTCGGAACGCGTGATGCTGTACGT
GCGGCAGGAGAACGAGGAGGTGTATACACCGTTGCACGTGGTGCCGCCCA
CCACGATCGGCCTGCTAAATGCGATTGAAAACAAATACAAAATCTCAACA
ACGAGCATAAATAACATTTATCGCACAAACAAGAAGGGGATTACTGCGAA
AATTGACGATGACATGATATCGTTCTACTGCAACGAGGACATCTTTCTGC
TGGAGGTGCAACAGATCGAGGACGACCTGTACGATGTGACGCTCACGGAG
CTGCCCAATCAGGCAAGCTTTCTAGACCAT
BO20685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-RH | 3099 | CG42311-PH | 1..3096 | 17..3112 | 15480 | 100 | Plus |
| grh-RP | 3192 | CG42311-PP | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| grh-RI | 3192 | CG42311-PI | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| grh-RP | 3192 | CG42311-PP | 2678..3189 | 2601..3112 | 2560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-RH | 3972 | CG42311-RH | 838..3933 | 17..3112 | 15480 | 100 | Plus |
| grh-RP | 6230 | CG42311-RP | 2300..4885 | 17..2602 | 12930 | 100 | Plus |
| grh-RI | 4768 | CG42311-RI | 838..3423 | 17..2602 | 12930 | 100 | Plus |
| grh-RP | 6230 | CG42311-RP | 4977..5488 | 2601..3112 | 2560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17808411..17809654 | 17..1260 | 6220 | 100 | Plus |
| 2R | 25286936 | 2R | 17820998..17821411 | 1259..1672 | 2070 | 100 | Plus |
| 2R | 25286936 | 2R | 17828329..17828554 | 1671..1896 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 17839594..17839789 | 2728..2923 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 17839040..17839221 | 2421..2602 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 17828743..17828905 | 1897..2059 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 17839313..17839439 | 2601..2727 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 17840747..17840871 | 2988..3112 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 17830995..17831108 | 2058..2171 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 17835749..17835850 | 2322..2423 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 17831668..17831765 | 2169..2266 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 17840434..17840500 | 2923..2989 | 335 | 100 | Plus |
| 2R | 25286936 | 2R | 17834613..17834672 | 2265..2324 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:48 has no hits.
BO20685.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 18:18:40 Download gff for
BO20685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RI | 916..3501 | 17..2602 | 100 | -> | Plus |
| grh-RI | 3595..4104 | 2603..3114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:24 Download gff for
BO20685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 838..3933 | 17..3114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:39 Download gff for
BO20685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 838..3933 | 17..3114 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:39 Download gff for
BO20685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17839042..17839221 | 2423..2602 | 100 | -> | Plus |
| 2R | 17839315..17839439 | 2603..2727 | 100 | -> | Plus |
| 2R | 17839594..17839789 | 2728..2923 | 100 | -> | Plus |
| 2R | 17840435..17840499 | 2924..2988 | 100 | -> | Plus |
| 2R | 17840748..17840871 | 2989..3114 | 98 | | Plus |
| 2R | 17808411..17809654 | 17..1260 | 100 | -> | Plus |
| 2R | 17821000..17821411 | 1261..1672 | 100 | -> | Plus |
| 2R | 17828331..17828554 | 1673..1896 | 100 | -> | Plus |
| 2R | 17828743..17828905 | 1897..2059 | 100 | -> | Plus |
| 2R | 17830997..17831108 | 2060..2171 | 100 | -> | Plus |
| 2R | 17831671..17831765 | 2172..2266 | 100 | -> | Plus |
| 2R | 17834615..17834671 | 2267..2323 | 100 | -> | Plus |
| 2R | 17835751..17835849 | 2324..2422 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:24 Download gff for
BO20685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13728253..13728376 | 2989..3114 | 98 | | Plus |
| arm_2R | 13695916..13697159 | 17..1260 | 100 | -> | Plus |
| arm_2R | 13708505..13708916 | 1261..1672 | 100 | -> | Plus |
| arm_2R | 13715836..13716059 | 1673..1896 | 100 | -> | Plus |
| arm_2R | 13716248..13716410 | 1897..2059 | 100 | -> | Plus |
| arm_2R | 13718502..13718613 | 2060..2171 | 100 | -> | Plus |
| arm_2R | 13719176..13719270 | 2172..2266 | 100 | -> | Plus |
| arm_2R | 13722120..13722176 | 2267..2323 | 100 | -> | Plus |
| arm_2R | 13723256..13723354 | 2324..2422 | 100 | -> | Plus |
| arm_2R | 13726547..13726726 | 2423..2602 | 100 | -> | Plus |
| arm_2R | 13726820..13726944 | 2603..2727 | 100 | -> | Plus |
| arm_2R | 13727099..13727294 | 2728..2923 | 100 | -> | Plus |
| arm_2R | 13727940..13728004 | 2924..2988 | 100 | -> | Plus |
BO20685.pep Sequence
Translation from 16 to 3130
> BO20685.pep
MSTSTATTSVITSNELSLSGHAHGHGHAHQLHQHTHSRLGVGVGVGILSD
ASLSPIQQGSGGHSGGGNTNSSPLAPNGVPLLTTMHRSPDSPQPELATMT
NVNVLDLHTDNSKLYDKEAVFIYETPKVVMPADGGGGNNSDEGHAIDARI
AAQMGNQAQQQQQQQQQTEHQPLAKIEFDENQIIRVVGPNGEQQQIISRE
IINGEHHILSRNEAGEHILTRIVSDPSKLMPNDNAVATAMYNQAQKMNND
HGQAVYQTSPLPLDASVLHYSGGNDSNVIKTEADIYEDHKKHAAAAAAAA
GGGSIIYTTSDPNGVNVKQLPHLTVPQKLDPDLYQADKHIDLIYNDGSKT
VIYSTTDQKSLEIYSGGDIGSLVSDGQVVVQAGLPYATTTGAGGQPVYIV
ADGALPAGVEEHLQSGKLNGQTTPIDVSGLSQNEIQGFLLGSHPSSSATV
STTGVVSTTTISHHQQQQQQQQQQQQQQQQQHQQQQQHPGDIVSAAGVGS
TGSIVSSAAQQQQQQQLISIKREPEDLRKDPKNGNIAGAATANGPGSVIT
QKSFDYTELCQPGTLIDANGSIPVSVNSIQQRTAVHGSQNSPTTSLVDTS
TNGSTRSRPWHDFGRQNDADKIQIPKIFTNVGFRYHLESPISSSQRREDD
RITYINKGQFYGITLEYVHDAEKPIKNTTVKSVIMLMFREEKSPEDEIKA
WQFWHSRQHSVKQRILDADTKNSVGLVGCIEEVSHNAIAVYWNPLESSAK
INIAVQCLSTDFSSQKGVKGLPLHVQIDTFEDPRDTAVFHRGYCQIKVFC
DKGAERKTRDEERRAAKRKMTATGRKKLDELYHPVTDRSEFYGMQDFAKP
PVLFSPAEDMEKSFYGHETDSPDLKGASPFLLHGQKVATPTLKFHNHFPP
DMQTDKKDHILDQNMLTSTPLTDFGPPMKRGRMTPPTSERVMLYVRQENE
EVYTPLHVVPPTTIGLLNAIENKYKISTTSINNIYRTNKKGITAKIDDDM
ISFYCNEDIFLLEVQQIEDDLYDVTLTELPNQASFLDH
BO20685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-PH | 1032 | CG42311-PH | 1..1032 | 1..1032 | 5382 | 100 | Plus |
| grh-PP | 1063 | CG42311-PP | 1..1063 | 1..1032 | 5340 | 97.1 | Plus |
| grh-PI | 1063 | CG5058-PA | 1..1063 | 1..1032 | 5340 | 97.1 | Plus |
| grh-PK | 784 | CG42311-PK | 136..784 | 415..1032 | 3192 | 95.2 | Plus |
| grh-PL | 1302 | CG42311-PL | 1..613 | 1..606 | 2848 | 92.2 | Plus |
