BO20686.complete Sequence
1282 bp assembled on 2009-10-23
GenBank Submission: KX799354
> BO20686.complete
GAAGTTATCAGTCGACATGTTACAGCATCCCGCCACAGATTTCTACGACT
TGGCCGCGGCCAATGCGGCTGCCGTTCTCACCGCCCGTCACACGCCTCCT
TATAGTCCCACCGGTCTCAGCGGATCGGTGGCCCTGCACAACAACAACAA
CAATAACAGCAGCACCAGCAATAACAACAACAGCACTCTGGACATCATGG
CGCACAACGGCGGCGGAGCAGGCGGTGGCCTCCATCTGAACAGCAGCAGC
AACGGCGGCGGCGGCGGCGGAGTGGTCAGTGGTGGAGGCTCCGGCGGCAG
GGAGAACCTGCCCAGCTTCGGCTTCACCCAGGAGCAGGTGGCCTGTGTTT
GCGAGGTTCTCCAGCAGGCGGGCAACATCGAAAGACTGGGCCGCTTCCTC
TGGTCGCTGCCACAATGTGATAAGCTGCAGCTGAACGAGTCCGTGCTGAA
GGCCAAGGCGGTCGTCGCATTCCACCGGGGACAATACAAGGAGCTGTACC
GCCTGCTCGAGCATCACCACTTCTCGGCCCAGAATCACGCCAAGCTCCAG
GCCCTGTGGTTGAAAGCGCATTATGTGGAAGCCGAAAAACTGCGCGGAAG
ACCCTTGGGTGCTGTTGGCAAATATCGTGTTCGCCGTAAATTTCCATTGC
CCCGCACCATCTGGGATGGCGAGGAGACGAGCTACTGTTTTAAGGAAAAA
TCGCGCTCCGTACTGAGGGACTGGTACTCGCACAATCCGTATCCATCGCC
GCGGGAGAAACGCGATCTGGCCGAGGCCACAGGACTGACCACCACGCAGG
TTTCCAATTGGTTCAAGAACCGACGACAAAGAGATCGAGCTGCCGAACAC
AAAGACGGCTCCACGGACAAGCAGCACCTTGACTCCTCCAGCGACTCCGA
GATGGAGGGCAGCATGTTGCCCAGCCAGAGTGCGCAGCACCAGCAGCAGC
AGCAACAGCAGCAGCATTCACCCGGCAACAGCAGCGGCAACAACAACGGC
CTGCATCAGCAGCAGCTGCAGCATGTCGCCGCCGAGCAAGGCCTGCAGCA
CCATCCGCACCAGCCACATCCCGCCAGCAATATCGCCAATGTCGCCGCCA
CCAAGAGCAGTGGCGGCGGCGGCGGAGGAGGCGTGAGTGCGGCGGCCGCT
GCCCAGATGCAAATGCCTCCACTGACCGCCGCCGTGGCCTATTCGCACCT
GCACAGCGTGATGGGCGCCATGCCCATGACCGCCATGTACGACATGGGCG
AGTACCAGCACTTAGCAAGCTTTCTAGACCAT
BO20686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| so-RA | 1251 | CG11121-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| so-RA | 2786 | CG11121-RA | 796..2043 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7433721..7434129 | 856..1264 | 2045 | 100 | Plus |
| 2R | 25286936 | 2R | 7424331..7424671 | 17..357 | 1705 | 100 | Plus |
| 2R | 25286936 | 2R | 7424803..7425015 | 354..566 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 7425151..7425281 | 565..695 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 7425874..7425982 | 693..801 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 7426181..7426239 | 797..855 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6857 | 139..253 | 185 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2484 | 139..268 | 175 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2353 | 139..185 | 172 | 85.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6824 | 139..256 | 154 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6923 | 139..259 | 147 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2872 | 148..269 | 140 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2538 | 139..253 | 137 | 63.7 | Plus |
BO20686.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-23 10:13:25 Download gff for
BO20686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| so-RA | 1119..2361 | 22..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:26 Download gff for
BO20686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| so-RA | 801..2043 | 22..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:07 Download gff for
BO20686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| so-RA | 801..2043 | 22..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:07 Download gff for
BO20686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7426184..7426239 | 800..855 | 100 | -> | Plus |
| 2R | 7424336..7424669 | 22..355 | 100 | -> | Plus |
| 2R | 7424805..7425015 | 356..566 | 100 | -> | Plus |
| 2R | 7425153..7425280 | 567..694 | 100 | -> | Plus |
| 2R | 7425876..7425980 | 695..799 | 100 | -> | Plus |
| 2R | 7433721..7434129 | 856..1266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:26 Download gff for
BO20686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3311841..3312174 | 22..355 | 100 | -> | Plus |
| arm_2R | 3312310..3312520 | 356..566 | 100 | -> | Plus |
| arm_2R | 3312658..3312785 | 567..694 | 100 | -> | Plus |
| arm_2R | 3313381..3313485 | 695..799 | 100 | -> | Plus |
| arm_2R | 3313689..3313744 | 800..855 | 100 | -> | Plus |
| arm_2R | 3321226..3321634 | 856..1266 | 99 | | Plus |
BO20686.pep Sequence
Translation from 16 to 1282
> BO20686.pep
MLQHPATDFYDLAAANAAAVLTARHTPPYSPTGLSGSVALHNNNNNNSST
SNNNNSTLDIMAHNGGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRENLPS
FGFTQEQVACVCEVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVV
AFHRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAV
GKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHNPYPSPREKRD
LAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSM
LPSQSAQHQQQQQQQQHSPGNSSGNNNGLHQQQLQHVAAEQGLQHHPHQP
HPASNIANVAATKSSGGGGGGGVSAAAAAQMQMPPLTAAVAYSHLHSVMG
AMPMTAMYDMGEYQHLASFLDH
BO20686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| so-PA | 416 | CG11121-PA | 1..416 | 1..416 | 2215 | 100 | Plus |
| Six4-PB | 392 | CG3871-PB | 100..357 | 22..279 | 647 | 50.6 | Plus |
| Six4-PA | 392 | CG3871-PA | 100..357 | 22..279 | 647 | 50.6 | Plus |
| Optix-PA | 487 | CG18455-PA | 32..350 | 98..393 | 633 | 43 | Plus |
| Optix-PC | 492 | CG18455-PC | 32..350 | 98..393 | 633 | 43 | Plus |
