BO20687.complete Sequence
1564 bp assembled on 2010-10-20
GenBank Submission: KX797999
> BO20687.complete
GAAGTTATCAGTCGACATGCATCTGCCAGCGGGTCCAACGATGGTGGCCA
ACAACACACAGGTCCTGGCCGCTGCCGCCGCCGCAGCAGCCGCCGCAGCG
GCCGCGGTAGCCCAGGGTCCTGGGCCGCAGCAGAGTAGCAATGCCACCAC
CGCCTCCGCAATCGCCATCAATCCCGCCCAGAGTCTGGCCAACACGAGCA
CCCACTCGGCCAGCAGCACGGGCAGCTCCACACCAGATCTCAGCACGAAC
AACACCAGCTCGAGCAGCAACGCCACCACCAGTCCGCAGAACTCCGCCAA
GATGCCCAGCTCGATGACCGACATGTTCGCCAGCCTGCACGAGATGCTGC
AGGAGTATCACGGCGAGCTGGCCCAGACCGGATCGCCCTCGATCCTCTGC
AGCGCCCTGCCCAATCACTGGCGGTCGAACAAGTCGCTGCCCGGAGCCTT
CAAGGTGATCGCCCTGGACGACGTGCCCGATGGCACCCTGGTGTCCATCA
AGTGCGGCAACGACGAAAACTACTGCGGCGAGCTGAGGAACTGCACCACG
ACCATGAAGAACCAGGTGGCCAAGTTCAACGATCTGCGCTTCGTGGGACG
ATCGGGACGCGGCAAGTCCTTCACGCTGACCATCACCATTGCCACCTATC
CGGTGCAGATCGCCAGCTACAGCAAAGCCATCAAGGTGACCGTCGACGGG
CCACGGGAGCCAAGAAGTAAGCAAAGCTATGGCTATCCCCATCCCGGCGC
GTTTAACCCGTTCATGCTGAATCCCGCTTGGCTGGATGCGGCGTACATGA
CCTACGGCTATGCGGACTACTTCCGCCACCAGGCAGCCGCCCAGGCGGCC
CAGGTGCATCATCCGGCACTGGCCAAGTCCTCGGCTTCCTCGGTGTCGCC
AAATCCCAATCCATCGGTGGCCACCAGCTCCTCGTCGGCGGTTCAGCCAT
CTGAGTATCCCCATCCGGCGGCAGCAGTGGCAGCGGCGGCGGGACAACCG
GCGGCCATGATGCCATCGCCACCGGGAGCGGCGCCTGCCACGCCCTATGC
CATTCCGCAGTTCCCATTCAACCATGTGGCCGCCGCAGCCGCCGCCAAGG
CAGCCACGCCACACGCCTTCCATCCGTATAACTTTGCCGCGGCAGCTGGC
TTGCGGGCCCGCAATGCTGCCCTGCACCACCAGAGCGAGCCGGTCCACGT
CAGCCCCGCCTCCTCCAGGCCCTCCAGCTCCTCGCCCACCCAGCAACACG
TCCTGCTGAAGCTAAACACCTCCATCGAGACGAGCTCCATCCACGAGCAG
TCCGCCAGTGACGGCGACTCCGACGACGAGCAGATCGACGTGGTCAAATC
GGAGTTCGACCTGGACAAGAGCCTGGATGTGGCGCCACTTCGCATGCGCT
GCGACCTGAAGGCGCCCTCGGCCATGAAGCCGCTCTACCACGAGAGCGGT
CCTGGAGCGGTAGCCAACAGCCGCCAGCCGTCGCCGGAAACGACCACCAA
GATCAAGAGCGCCGCCGTGCAGCAGAAGACCGTGTGGCGGCCCTACGCAA
GCTTTCTAGACCAT
BO20687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RC | 1533 | CG1849-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| run-RA | 1533 | CG1849-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| run-RB | 1524 | CG1849-PB | 1..1521 | 17..1546 | 7480 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RC | 3145 | CG1849-RC | 922..2455 | 13..1546 | 7655 | 99.9 | Plus |
| run-RA | 2474 | CG1849-RA | 251..1784 | 13..1546 | 7655 | 99.9 | Plus |
| run-RB | 2171 | CG1849-RB | 251..1775 | 13..1546 | 7485 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20695811..20696631 | 726..1546 | 4105 | 100 | Plus |
| X | 23542271 | X | 20694689..20695402 | 13..726 | 3555 | 99.9 | Plus |
| X | 23542271 | X | 9288353..9288560 | 393..600 | 290 | 76 | Plus |
| X | 23542271 | X | 20541938..20542030 | 505..597 | 210 | 81.7 | Plus |
| X | 23542271 | X | 20604130..20604203 | 579..506 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:25:09 has no hits.
BO20687.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:48 Download gff for
BO20687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 253..1782 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:43 Download gff for
BO20687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 253..1782 | 17..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:45 Download gff for
BO20687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 255..1784 | 17..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:45 Download gff for
BO20687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20694693..20695401 | 17..725 | 100 | -> | Plus |
| X | 20695811..20696631 | 726..1548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:43 Download gff for
BO20687.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20565720..20566428 | 17..725 | 100 | -> | Plus |
| arm_X | 20566838..20567658 | 726..1548 | 99 | | Plus |
BO20687.pep Sequence
Translation from 16 to 1564
> BO20687.pep
MHLPAGPTMVANNTQVLAAAAAAAAAAAAAVAQGPGPQQSSNATTASAIA
INPAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSM
TDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIAL
DDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGK
SFTLTITIATYPVQIASYSKAIKVTVDGPREPRSKQSYGYPHPGAFNPFM
LNPAWLDAAYMTYGYADYFRHQAAAQAAQVHHPALAKSSASSVSPNPNPS
VATSSSSAVQPSEYPHPAAAVAAAAGQPAAMMPSPPGAAPATPYAIPQFP
FNHVAAAAAAKAATPHAFHPYNFAAAAGLRARNAALHHQSEPVHVSPASS
RPSSSSPTQQHVLLKLNTSIETSSIHEQSASDGDSDDEQIDVVKSEFDLD
KSLDVAPLRMRCDLKAPSAMKPLYHESGPGAVANSRQPSPETTTKIKSAA
VQQKTVWRPYASFLDH
BO20687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-PC | 510 | CG1849-PC | 1..510 | 1..510 | 2629 | 100 | Plus |
| run-PA | 510 | CG1849-PA | 1..510 | 1..510 | 2629 | 100 | Plus |
| run-PB | 507 | CG1849-PB | 1..507 | 1..510 | 2601 | 99.4 | Plus |
| RunxB-PC | 663 | CG42267-PC | 34..370 | 38..311 | 590 | 41.2 | Plus |
| lz-PA | 826 | CG1689-PA | 189..583 | 10..404 | 584 | 39.2 | Plus |
