BO20688.complete Sequence
1315 bp assembled on 2009-05-13
GenBank Submission: KX797944
> BO20688.complete
GAAGTTATCAGTCGACATGGTTTCGGAGGAGAACTGGAATAGCGACACGA
TGTCCGACTCGGACATGATCGACTCAAAGAACGACGTCTGTGGCGGAGCC
TCCAGTTCCAGCGGCAGCTCGATTTCGCCGAGGACACCACCGAACTGCGC
CCGCTGCCGCAATCATGGCCTAAAGATCACCCTAAAGGGACACAAGCGGT
ACTGCAAGTTCCGCTACTGCACGTGCGAGAAGTGCCGACTGACGGCGGAC
CGCCAGCGGGTGATGGCTCTGCAAACGGCCTTGAGGCGAGCCCAGGCGCA
GGATGAGCAGCGGGCGCTGCACATGCACGAGGTGCCGCCTGCCAATCCGG
CGGCCACGACCCTCCTGAGTCATCACCATCATGTCGCAGCTCCCGCTCAT
GTCCACGCCCACCATGTGCACGCCCATCACGCACACGGAGGACACCACTC
GCATCACGGACATGTCCTGCACCACCAGCAGGCAGCGGCGGCCGCAGCAG
CAGCTCCGTCGGCTCCAGCCTCCCATCTGGGTGGCTCCAGCACGGCCGCT
TCCAGCATCCACGGTCACGCCCACGCGCACCACGTCCACATGGCAGCTGC
TGCAGCCGCCTCGGTGGCTCAGCACCAGCACCAAAGCCACCCACACTCGC
ACCACCACCACCACCAGAACCACCACCAGCATCCGCATCAGCAACCGGCC
ACGCAGACCGCCCTGCGATCTCCGCCGCACAGCGACCATGGTGGCAGTGT
GGGTCCGGCCACCAGCAGCTCCGGCGGTGGAGCACCCAGTTCCAGCAATG
CGGCAGCGGCCACCTCGAGCAACGGATCCAGCGGCGGTGGAGGAGGAGGC
GGAGGGGGCAGCTCGGGTGGCGGGGCAGGAGGTGGTAGGTCATCGGGAAC
ATCGGTGATCACTAGCGCCGATCACCACATGACCACGGTGCCTACGCCCG
CCCAATCGCTGGAGGGGTCCTGCGACTCGTCGTCGCCCTCGCCGTCGTCC
ACTTCCGGTGCAGCCATTTTGCCGATCTCAGTTTCCGTCAATCGAAAGAA
CGGCGCCAATGTGCCCTTGGGCCAAGACGTTTTCCTAGACTATTGCCAAA
AGCTATTAGAAAAATTCCGCTATCCTTGGGAGCTGATGCCACTCATGTAT
GTGATATTAAAGGACGCAGACGCCAACATTGAAGAGGCTTCCCGGCGAAT
CGAAGAGGGCCAATACGTTGTGAATGAGTACTCCCGTCAACATAATTTGA
ATATCTATGACGGGGGTGAGCTGCGCAACACAACGCGGCAATGTGGAGCA
AGCTTTCTAGACCAT
BO20688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-RF | 1284 | CG11094-PF | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| dsx-RC | 1284 | CG11094-PC | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| dsx-RB | 1284 | CG11094-PB | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-RF | 6941 | CG11094-RF | 1263..2544 | 16..1297 | 6410 | 100 | Plus |
| dsx-RC | 3238 | CG11094-RC | 874..2155 | 16..1297 | 6410 | 100 | Plus |
| dsx-RB | 3627 | CG11094-RB | 1263..2544 | 16..1297 | 6410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7959751..7960806 | 1071..16 | 5280 | 100 | Minus |
| 3R | 32079331 | 3R | 7935767..7935906 | 1209..1070 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 7935565..7935654 | 1297..1208 | 450 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2384 | 620..697 | 174 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6790..6889 | 593..697 | 162 | 64.8 | Plus |
BO20688.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:49 Download gff for
BO20688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RC | 875..2155 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:03 Download gff for
BO20688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RB | 1264..2544 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:57 Download gff for
BO20688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dsx-RB | 1264..2544 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:57 Download gff for
BO20688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7935562..7935653 | 1209..1299 | 97 | <- | Minus |
| 3R | 7935768..7935905 | 1071..1208 | 100 | <- | Minus |
| 3R | 7959752..7960805 | 17..1070 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:03 Download gff for
BO20688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3761284..3761375 | 1209..1299 | 97 | <- | Minus |
| arm_3R | 3761490..3761627 | 1071..1208 | 100 | <- | Minus |
| arm_3R | 3785474..3786527 | 17..1070 | 100 | | Minus |
BO20688.pep Sequence
Translation from 16 to 1315
> BO20688.pep
MVSEENWNSDTMSDSDMIDSKNDVCGGASSSSGSSISPRTPPNCARCRNH
GLKITLKGHKRYCKFRYCTCEKCRLTADRQRVMALQTALRRAQAQDEQRA
LHMHEVPPANPAATTLLSHHHHVAAPAHVHAHHVHAHHAHGGHHSHHGHV
LHHQQAAAAAAAAPSAPASHLGGSSTAASSIHGHAHAHHVHMAAAAAASV
AQHQHQSHPHSHHHHHQNHHQHPHQQPATQTALRSPPHSDHGGSVGPATS
SSGGGAPSSSNAAAATSSNGSSGGGGGGGGGSSGGGAGGGRSSGTSVITS
ADHHMTTVPTPAQSLEGSCDSSSPSPSSTSGAAILPISVSVNRKNGANVP
LGQDVFLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEEGQY
VVNEYSRQHNLNIYDGGELRNTTRQCGASFLDH
BO20688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dsx-PF | 427 | CG11094-PF | 1..427 | 1..427 | 2309 | 100 | Plus |
| dsx-PC | 427 | CG11094-PC | 1..427 | 1..427 | 2309 | 100 | Plus |
| dsx-PB | 427 | CG11094-PB | 1..427 | 1..427 | 2309 | 100 | Plus |
| dsx-PE | 572 | CG11094-PE | 1..414 | 1..414 | 2156 | 96.9 | Plus |
| dsx-PD | 549 | CG11094-PD | 1..414 | 1..414 | 2156 | 96.9 | Plus |
