BO20689.complete Sequence
1861 bp assembled on 2010-10-20
GenBank Submission: KX796451
> BO20689.complete
GAAGTTATCAGTCGACATGATGATGAACGCCTTCATTGAGCCGGCTCAGC
ACCACCTGGCCAGCTACGGGCTGCGAATGTCGCCCAACACCACCGCCAGT
AACAGCAACGCGCAGCAGCAACAGCAGCAGCAACTGGAGATGACCCAACA
GCAGCAGCAACAACAGCAACAACAGCAGCAGCAACAGCAACAGGATCAGG
AATCCGCGGCGGCCACTGCTGCAGCCTATCAGAACTCCGGATATGGGCAC
TTTAACAGCTATGCCTCCCGGGACTTTTTGCTGGGCAGGAGGGAGGCCGA
GTACGGTGTGGCAGGATCCGCCGGACAGGCCTCCGCCGCAGCGGATTCCA
TGCTCTTCTCCGGCTTTCCCGCTCAGGCCGCGGAGCTGGGCTCCGGGTTC
GGACAACACCCCTTCCACAGCCACCATCACCACCATCAGATGCGAATGGG
CATGGCGGATGCCTACGCCGCCGGCCACCCGTACAACCACCACGGCAACT
TCCCGACGGCGGCAGTGCACCACCCGGTCGTGCACCACCCGTCCCACCAC
GCCATGTCCGCGATGCACCCGGCCGGAGCAGGGGCCTTCCTGCGCTACAT
GCGCCATCAGCCGGCCTCGTCCGCCTCCAGCGTTAAGCAGGAGATGCAGT
GCCTCTGGATAGACCCCGACCAGCCGGGCCTGGTGCCCCCGGGCGGCAGG
AAGACCTGCAACAAGGTATTCCACTCGATGCACGAGATCGTCACCCACCT
GACCGTGGAGCACGTGGGCGGACCCGAGTGCACCACCCACGCCTGCTTCT
GGGTGGGCTGCTCTCGCAACGGACGCCCTTTCAAGGCCAAGTACAAGCTG
GTCAACCACATCCGCGTCCACACCGGCGAGAAACCTTTCGCCTGCCCGCA
CCCGGGTTGCGGCAAGGTCTTCGCCCGGAGCGAGAACCTCAAGATCCACA
AGCGGACGCATACAGGCGAGAAGCCCTTCAAGTGCGAGCACGAGGGCTGT
GATCGCCGGTTCGCCAACTCCTCGGATCGGAAGAAGCACTCCCACGTCCA
CACGTCGGACAAGCCCTACAATTGCCGGATTAATGGCTGTGATAAGTCCT
ACACGCATCCCTCTTCGCTGCGGAAGCACATGAAGGTGCATGGCAATGTG
GACGAGAAGAGCCCATCCCACGGCTACGACAGCGAGGGCGAGGAGAGCTC
CAGCTCGAGCATCATCACCGGCGGAGCCCAGACGCCGCCTTCGACCCGAC
TGGATGGAAGTGCAGGCAGCAGCAGCGGGGTGAGCAGCCTGAGCGGCGGA
AGCGGCATCAAGTCCTCCCCGCACTCGATCAAGTCGGAGCCCAATCCGAT
GCACAGTGTCCACCTGGGAGCCTCGAGCAGCGGCAGCAGCAGCACGGCCA
GCAGCAGTGCTTCCCACTTGCTGCAGCACCAGCAGCACCAGCACCAGCAG
CAGCAACAACAGCAGCAGCACCAGCAGCAGGCACAGCAGCAGCAACAGCT
GACCGCCCATCCCAGCGACCCGAAGTCCTCGCCTGCCCTCCAACTGATGG
CCGCTTCTGCCTCCGCCTACCTGCCACCGCCGCTGGGACCGCCGCCGTCG
CACCACCACCACCCCCATCACCACCAGGCGGCGCCCTCTCCGGGGGCAGC
TGCTGCCTCCGCCTCCATGCTGCACCACAACCACCACCTACTGTACCACC
CGGCGGCCCAGCACCACCCACCCAGCGACTGGTACCACACGACGGCGCCG
AGCGGCAGTGCGGAGGCCATGAACCCGCTGAACCATTTCGGACACCATCA
CCACCACCACCACCTGATGCATCCCGGCGCAGCGACGGCGTATGCAAGCT
TTCTAGACCAT
BO20689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opa-RA | 1830 | CG1133-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opa-RA | 2939 | CG1133-RA | 293..2120 | 16..1843 | 9140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4853105..4854055 | 16..966 | 4755 | 100 | Plus |
3R | 32079331 | 3R | 4868451..4869160 | 1134..1843 | 3550 | 100 | Plus |
3R | 32079331 | 3R | 4868140..4868314 | 963..1137 | 875 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2549 | 1258..1464 | 175 | 57.6 | Plus |
BO20689.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:53 Download gff for
BO20689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
opa-RA | 294..2120 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:56 Download gff for
BO20689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
opa-RA | 294..2120 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:15 Download gff for
BO20689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
opa-RA | 294..2120 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:15 Download gff for
BO20689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4868143..4868312 | 966..1135 | 100 | -> | Plus |
3R | 4853106..4854054 | 17..965 | 100 | -> | Plus |
3R | 4868453..4869160 | 1136..1845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:56 Download gff for
BO20689.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 678828..679776 | 17..965 | 100 | -> | Plus |
arm_3R | 693865..694034 | 966..1135 | 100 | -> | Plus |
arm_3R | 694175..694882 | 1136..1845 | 99 | | Plus |
BO20689.pep Sequence
Translation from 16 to 1861
> BO20689.pep
MMMNAFIEPAQHHLASYGLRMSPNTTASNSNAQQQQQQQLEMTQQQQQQQ
QQQQQQQQQDQESAAATAAAYQNSGYGHFNSYASRDFLLGRREAEYGVAG
SAGQASAAADSMLFSGFPAQAAELGSGFGQHPFHSHHHHHQMRMGMADAY
AAGHPYNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPA
SSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHV
GGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFACPHPGCGK
VFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSHVHTSDKP
YNCRINGCDKSYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSSSSII
TGGAQTPPSTRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHL
GASSSGSSSTASSSASHLLQHQQHQHQQQQQQQQHQQQAQQQQQLTAHPS
DPKSSPALQLMAASASAYLPPPLGPPPSHHHHPHHHQAAPSPGAAAASAS
MLHHNHHLLYHPAAQHHPPSDWYHTTAPSGSAEAMNPLNHFGHHHHHHHL
MHPGAATAYASFLDH
BO20689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opa-PA | 609 | CG1133-PA | 1..609 | 1..609 | 3347 | 100 | Plus |
lmd-PB | 866 | CG4677-PB | 442..681 | 231..491 | 500 | 40.5 | Plus |
ci-PB | 1279 | CG2125-PB | 338..556 | 229..438 | 405 | 40.5 | Plus |
sug-PB | 322 | CG3850-PB | 56..299 | 200..476 | 401 | 33.8 | Plus |
sug-PA | 384 | CG3850-PA | 118..361 | 200..476 | 401 | 33.8 | Plus |