Clone BO20689 Report

Search the DGRC for BO20689

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptopa-RA
Protein status:BO20689.pep: Imported from assembly
Sequenced Size:1861

Clone Sequence Records

BO20689.complete Sequence

1861 bp assembled on 2010-10-20

GenBank Submission: KX796451

> BO20689.complete
GAAGTTATCAGTCGACATGATGATGAACGCCTTCATTGAGCCGGCTCAGC
ACCACCTGGCCAGCTACGGGCTGCGAATGTCGCCCAACACCACCGCCAGT
AACAGCAACGCGCAGCAGCAACAGCAGCAGCAACTGGAGATGACCCAACA
GCAGCAGCAACAACAGCAACAACAGCAGCAGCAACAGCAACAGGATCAGG
AATCCGCGGCGGCCACTGCTGCAGCCTATCAGAACTCCGGATATGGGCAC
TTTAACAGCTATGCCTCCCGGGACTTTTTGCTGGGCAGGAGGGAGGCCGA
GTACGGTGTGGCAGGATCCGCCGGACAGGCCTCCGCCGCAGCGGATTCCA
TGCTCTTCTCCGGCTTTCCCGCTCAGGCCGCGGAGCTGGGCTCCGGGTTC
GGACAACACCCCTTCCACAGCCACCATCACCACCATCAGATGCGAATGGG
CATGGCGGATGCCTACGCCGCCGGCCACCCGTACAACCACCACGGCAACT
TCCCGACGGCGGCAGTGCACCACCCGGTCGTGCACCACCCGTCCCACCAC
GCCATGTCCGCGATGCACCCGGCCGGAGCAGGGGCCTTCCTGCGCTACAT
GCGCCATCAGCCGGCCTCGTCCGCCTCCAGCGTTAAGCAGGAGATGCAGT
GCCTCTGGATAGACCCCGACCAGCCGGGCCTGGTGCCCCCGGGCGGCAGG
AAGACCTGCAACAAGGTATTCCACTCGATGCACGAGATCGTCACCCACCT
GACCGTGGAGCACGTGGGCGGACCCGAGTGCACCACCCACGCCTGCTTCT
GGGTGGGCTGCTCTCGCAACGGACGCCCTTTCAAGGCCAAGTACAAGCTG
GTCAACCACATCCGCGTCCACACCGGCGAGAAACCTTTCGCCTGCCCGCA
CCCGGGTTGCGGCAAGGTCTTCGCCCGGAGCGAGAACCTCAAGATCCACA
AGCGGACGCATACAGGCGAGAAGCCCTTCAAGTGCGAGCACGAGGGCTGT
GATCGCCGGTTCGCCAACTCCTCGGATCGGAAGAAGCACTCCCACGTCCA
CACGTCGGACAAGCCCTACAATTGCCGGATTAATGGCTGTGATAAGTCCT
ACACGCATCCCTCTTCGCTGCGGAAGCACATGAAGGTGCATGGCAATGTG
GACGAGAAGAGCCCATCCCACGGCTACGACAGCGAGGGCGAGGAGAGCTC
CAGCTCGAGCATCATCACCGGCGGAGCCCAGACGCCGCCTTCGACCCGAC
TGGATGGAAGTGCAGGCAGCAGCAGCGGGGTGAGCAGCCTGAGCGGCGGA
AGCGGCATCAAGTCCTCCCCGCACTCGATCAAGTCGGAGCCCAATCCGAT
GCACAGTGTCCACCTGGGAGCCTCGAGCAGCGGCAGCAGCAGCACGGCCA
GCAGCAGTGCTTCCCACTTGCTGCAGCACCAGCAGCACCAGCACCAGCAG
CAGCAACAACAGCAGCAGCACCAGCAGCAGGCACAGCAGCAGCAACAGCT
GACCGCCCATCCCAGCGACCCGAAGTCCTCGCCTGCCCTCCAACTGATGG
CCGCTTCTGCCTCCGCCTACCTGCCACCGCCGCTGGGACCGCCGCCGTCG
CACCACCACCACCCCCATCACCACCAGGCGGCGCCCTCTCCGGGGGCAGC
TGCTGCCTCCGCCTCCATGCTGCACCACAACCACCACCTACTGTACCACC
CGGCGGCCCAGCACCACCCACCCAGCGACTGGTACCACACGACGGCGCCG
AGCGGCAGTGCGGAGGCCATGAACCCGCTGAACCATTTCGGACACCATCA
CCACCACCACCACCTGATGCATCCCGGCGCAGCGACGGCGTATGCAAGCT
TTCTAGACCAT

BO20689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
opa-RA 1830 CG1133-PA 1..1827 17..1843 9135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
opa-RA 2939 CG1133-RA 293..2120 16..1843 9140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4853105..4854055 16..966 4755 100 Plus
3R 32079331 3R 4868451..4869160 1134..1843 3550 100 Plus
3R 32079331 3R 4868140..4868314 963..1137 875 100 Plus
Blast to na_te.dros performed 2014-11-26 15:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2549 1258..1464 175 57.6 Plus

BO20689.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:53 Download gff for BO20689.complete
Subject Subject Range Query Range Percent Splice Strand
opa-RA 294..2120 17..1845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:56 Download gff for BO20689.complete
Subject Subject Range Query Range Percent Splice Strand
opa-RA 294..2120 17..1845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:15 Download gff for BO20689.complete
Subject Subject Range Query Range Percent Splice Strand
opa-RA 294..2120 17..1845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:15 Download gff for BO20689.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4868143..4868312 966..1135 100 -> Plus
3R 4853106..4854054 17..965 100 -> Plus
3R 4868453..4869160 1136..1845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:56 Download gff for BO20689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 678828..679776 17..965 100 -> Plus
arm_3R 693865..694034 966..1135 100 -> Plus
arm_3R 694175..694882 1136..1845 99   Plus

BO20689.pep Sequence

Translation from 16 to 1861

> BO20689.pep
MMMNAFIEPAQHHLASYGLRMSPNTTASNSNAQQQQQQQLEMTQQQQQQQ
QQQQQQQQQDQESAAATAAAYQNSGYGHFNSYASRDFLLGRREAEYGVAG
SAGQASAAADSMLFSGFPAQAAELGSGFGQHPFHSHHHHHQMRMGMADAY
AAGHPYNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPA
SSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHV
GGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFACPHPGCGK
VFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSHVHTSDKP
YNCRINGCDKSYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSSSSII
TGGAQTPPSTRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHL
GASSSGSSSTASSSASHLLQHQQHQHQQQQQQQQHQQQAQQQQQLTAHPS
DPKSSPALQLMAASASAYLPPPLGPPPSHHHHPHHHQAAPSPGAAAASAS
MLHHNHHLLYHPAAQHHPPSDWYHTTAPSGSAEAMNPLNHFGHHHHHHHL
MHPGAATAYASFLDH

BO20689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
opa-PA 609 CG1133-PA 1..609 1..609 3347 100 Plus
lmd-PB 866 CG4677-PB 442..681 231..491 500 40.5 Plus
ci-PB 1279 CG2125-PB 338..556 229..438 405 40.5 Plus
sug-PB 322 CG3850-PB 56..299 200..476 401 33.8 Plus
sug-PA 384 CG3850-PA 118..361 200..476 401 33.8 Plus