BO20690.complete Sequence
2470 bp assembled on 2010-10-20
GenBank Submission: KX796819
> BO20690.complete
GAAGTTATCAGTCGACATGGAGGACATCAAGATCAAGATGGAGCCGCAGG
ACGAAGTGACGGACAGTTCAATCAGAATTCTGAGCGCATGTGATACGCTG
AAAATTTTGGACGAGGGATCTCAAATGATAACAGTGCCGATCAGGGATCG
TTTGCGTTCCGAGGACGAGCGCCTATTTATCGCCAGCCTGGAACTCGGCC
ACCAACAGATATTTGCGTCTGAATCGGAGGACAACCCAAATCCAAAACAT
TGCGATATTTGCCAGTACAAGTTTAAAAGCCAACAGGATATATCAAGTCA
CCGGGTTCATCACGAAATGAACCTACATTTTTGTCGCCTGGGCTGTGGTA
TCTGGCTGGACACGCTTGAAAAGATCCTTGAGCATGAATATCGCCAGCAT
TTCCAGCCAGGGCGTGTGTTGTGCTGTAGGGTTTGCGATTTTATGGCCAA
TAGCGCGGACGATCTGGCCAGCCATATGCAAAAGCACATTTACGTATATC
GCTTTGTTTGCTCCATTTGTCGTCGGCATTTTGAGTCCAAACAGAGCCTC
AATCTGCATAGGAAGCAGAGCCAGGACTTTTGCAGCCTGCTGGATTTCAG
AAAGGGGTCATCATCAAAGCCGGAACTTGTGGCAGTTAGTACGCCGGTAC
CTGAAGAGTCGAATTGCTATGTGCAAATAAAAGAAGAGCCACTTAACGCA
GAGGAAGCAGACCGAATGCTATTGGAAGACAACCCTCCACTCAATGTAAA
ATTGGAACCACAGGACGAGGAAATGCCAGATGTGAGTAGGATTAAGGAGG
AACAGTCAAATGGTAGCGTCTGGACAGCCATACATACTCCGTTGAGGAAT
AAACTGCGCCTGCCTGCTCTGGCCACTACCAAAAATCAGATGCACTTAAA
ACCAGGTGTTAAGCGAAATGGACTACTAACGTCTAATGTGGAATCTCTTA
ACAAGAAATCCAATCACTCAGTGATATCCGATGATGCGAATATTCCGATT
TCCAACCAAGAACCTTCAAATTCCTCAATTGCAGCCAATATACTGAAAGT
GTTACCTAGTAACTGCATGGTCATCAAGTTGCCTCCCAACACAAAAATTT
TTAAGACGCCAGGTCAAGCTCCGGCTGCCCCTAAGGACTCTCCCACCGTA
ACTCTGAGTGGTACGGAGAATTCAACCAATTTCATAAAGATTCCGAAGAC
GATAAGTATAAGTACTGTCGGTTCCATGGGTAATCCTCATGCGTCTGCTA
AGACTGTGCAACCAACCCAAACTCACAGTCGATCATCGTGCTTTCTTGTC
GACTCGTTTAACAATTCCAAGAGCAGACCCGAATCCATGAAGATAATCAA
TGAATTTCGTAATCAAATTCGGTCCATAGAGAAGACATTGCCACTGCCGG
GAACAGTGCTACAATCCTCGAAAGTAACGATGGATGAATCAACGTCGTCT
CCCATGGATGCACCCAAACCCGTAGAACTGATGCTCAACCCGTCGGCTTT
AATGGTGGCCAGGGAACTGGAGATCCAATACCCGCTATATCGATTTATGT
GGACTTGTCCGCTATGCCAGCGAATGTTTGAGAAGCATTGCGCATTTCGT
GCGCATCTGACTAACAAGCACGACTTAACCGATGAAAAGTGTAACGTCCT
TAAAGTGGTTTTAATGCCTTCTAAAATACTTTCACAGGACTCAGCAAATG
CTGCAACTCAAAGAGTGCATGTGCCATTGAATCCACAAACGCCTGTGCCT
CCTCCAGAACTACCCAATACTGTTAATTTGCCTTTATTGCTAAGTAAAAC
GTCTGCTCCATTAACAGGCCAGACATCAGCACTATCCAATGTGCCTGTTA
ACAAAGGTTTATCCCCGACAAGTATAAATATAGAAAAACCAAAGGTCTCC
AAGAAGCCCAAAAAAAATCAGTCGTTCCAGTGCACCGAATGCTTAAAAGT
GTTTACTACTTTTGGAGCCTTGCGCATTCACAAGTCCATACACACGGGGG
AACTGCCTTACCAGTGCAGCTACTGTGACAAACGTTTCCGAACTCCTGGA
CAAGTGCGGGTACACCACCGTCGTCACACCGGAGAGAAACCATTTAAGTG
CAAGATATGCTCGTTAGACTTTACTCACCGGGAAACTTTAATTTCCCATC
TATCACGGCATATTGGGATGAAGCGGTATAAATGCTACGGATGCGATAAA
TACTTTGTAGTTGTCAGCGGCTTACGAGCTCATCGTCGTCTCCGGCCAGA
CACCTGTGGGAAGGTTAAGTTCACCGCTCGAGCCCATGGTCCCCGCGTGC
GGGTCATCAGGGGAGAGGTGGTGTTCCAGTATCACCCAGAGCACAACGGC
TACTTACGCAGTGAGGACCCGCTCAACATTTTGTCCCAACGTGATCAAAC
CAACTCAACCCCGCCAGAAACTGCAATAGATACAGGAAATGCGATTAGGA
ACGCAAGCTTTCTAGACCAT
BO20690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10462-RA | 2439 | CG10462-PA | 1..2436 | 17..2452 | 12180 | 100 | Plus |
| CG10462-RD | 2436 | CG10462-PD | 1..2433 | 17..2452 | 12100 | 99.9 | Plus |
| CG10462-RE | 2433 | CG10462-PE | 1..2413 | 17..2429 | 12065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10462-RA | 3154 | CG10462-RA | 142..2580 | 14..2452 | 12195 | 100 | Plus |
| CG10462-RD | 3151 | CG10462-RD | 142..2577 | 14..2452 | 12115 | 99.9 | Plus |
| CG10462-RE | 3148 | CG10462-RE | 142..2557 | 14..2429 | 12080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19733639..19734412 | 1676..903 | 3870 | 100 | Minus |
| 2L | 23513712 | 2L | 19734470..19734942 | 902..430 | 2365 | 100 | Minus |
| 2L | 23513712 | 2L | 19733163..19733590 | 2104..1677 | 2140 | 100 | Minus |
| 2L | 23513712 | 2L | 19732745..19733071 | 2429..2103 | 1635 | 100 | Minus |
| 2L | 23513712 | 2L | 19734998..19735224 | 432..206 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 19735512..19735634 | 208..86 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 19735767..19735839 | 86..14 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:25:28 has no hits.
BO20690.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:49 Download gff for
BO20690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 113..2548 | 17..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:44 Download gff for
BO20690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 145..2580 | 17..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:50 Download gff for
BO20690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 145..2580 | 17..2454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:50 Download gff for
BO20690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19735000..19735221 | 209..430 | 100 | <- | Minus |
| 2L | 19735512..19735633 | 87..208 | 100 | <- | Minus |
| 2L | 19735767..19735836 | 17..86 | 100 | | Minus |
| 2L | 19734470..19734941 | 431..902 | 100 | <- | Minus |
| 2L | 19732652..19732676 | 2430..2454 | 92 | <- | Minus |
| 2L | 19732745..19733069 | 2105..2429 | 100 | <- | Minus |
| 2L | 19733163..19733590 | 1677..2104 | 100 | <- | Minus |
| 2L | 19733639..19734412 | 903..1676 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:44 Download gff for
BO20690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19732652..19732676 | 2430..2454 | 92 | <- | Minus |
| arm_2L | 19732745..19733069 | 2105..2429 | 100 | <- | Minus |
| arm_2L | 19733163..19733590 | 1677..2104 | 100 | <- | Minus |
| arm_2L | 19733639..19734412 | 903..1676 | 100 | <- | Minus |
| arm_2L | 19734470..19734941 | 431..902 | 100 | <- | Minus |
| arm_2L | 19735000..19735221 | 209..430 | 100 | <- | Minus |
| arm_2L | 19735512..19735633 | 87..208 | 100 | <- | Minus |
| arm_2L | 19735767..19735836 | 17..86 | 100 | | Minus |
BO20690.pep Sequence
Translation from 16 to 2470
> BO20690.pep
MEDIKIKMEPQDEVTDSSIRILSACDTLKILDEGSQMITVPIRDRLRSED
ERLFIASLELGHQQIFASESEDNPNPKHCDICQYKFKSQQDISSHRVHHE
MNLHFCRLGCGIWLDTLEKILEHEYRQHFQPGRVLCCRVCDFMANSADDL
ASHMQKHIYVYRFVCSICRRHFESKQSLNLHRKQSQDFCSLLDFRKGSSS
KPELVAVSTPVPEESNCYVQIKEEPLNAEEADRMLLEDNPPLNVKLEPQD
EEMPDVSRIKEEQSNGSVWTAIHTPLRNKLRLPALATTKNQMHLKPGVKR
NGLLTSNVESLNKKSNHSVISDDANIPISNQEPSNSSIAANILKVLPSNC
MVIKLPPNTKIFKTPGQAPAAPKDSPTVTLSGTENSTNFIKIPKTISIST
VGSMGNPHASAKTVQPTQTHSRSSCFLVDSFNNSKSRPESMKIINEFRNQ
IRSIEKTLPLPGTVLQSSKVTMDESTSSPMDAPKPVELMLNPSALMVARE
LEIQYPLYRFMWTCPLCQRMFEKHCAFRAHLTNKHDLTDEKCNVLKVVLM
PSKILSQDSANAATQRVHVPLNPQTPVPPPELPNTVNLPLLLSKTSAPLT
GQTSALSNVPVNKGLSPTSINIEKPKVSKKPKKNQSFQCTECLKVFTTFG
ALRIHKSIHTGELPYQCSYCDKRFRTPGQVRVHHRRHTGEKPFKCKICSL
DFTHRETLISHLSRHIGMKRYKCYGCDKYFVVVSGLRAHRRLRPDTCGKV
KFTARAHGPRVRVIRGEVVFQYHPEHNGYLRSEDPLNILSQRDQTNSTPP
ETAIDTGNAIRNASFLDH
BO20690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10462-PA | 812 | CG10462-PA | 1..812 | 1..812 | 4291 | 100 | Plus |
| CG10462-PE | 810 | CG10462-PE | 1..810 | 1..812 | 4267 | 99.8 | Plus |
| CG10462-PD | 811 | CG10462-PD | 1..811 | 1..812 | 4264 | 99.8 | Plus |
| CG10462-PC | 776 | CG10462-PC | 1..776 | 37..812 | 4113 | 100 | Plus |
| CG10462-PB | 776 | CG10462-PB | 1..776 | 37..812 | 4113 | 100 | Plus |
