Clone BO20694 Report

Search the DGRC for BO20694

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:206
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptRpL36A-RA
Protein status:BO20694.pep: Imported from assembly
Sequenced Size:346

Clone Sequence Records

BO20694.complete Sequence

346 bp assembled on 2009-05-13

GenBank Submission: KX798287

> BO20694.complete
GAAGTTATCAGTCGACATGGTGAACGTACCGAAACAACGCCGCACCTTCT
GCAAGAAGTGCAAGGTCCACAAGCTGCACAAGGTGACGCAGTACAAGAAG
TCCAAGGAGCGCAAGGGAGCTCAGGGCAGGCGTCGTTACGACAGGAAACA
GCAGGGTTTCGGAGGTCAGACCAAGCCCATCTTCAGGAAGAAGGCCAAGA
CCACCAAGAAGATTGTGCTGCGTATGGAGTGCACCGAGTGCAAATACCGC
AAGCAGACTCCCCTGAAGCGTTGCAAGCACTTCGAGCTGGGCGGTGACAA
GAAGCGCAAGGGACAGATGATCCAGTTCGCAAGCTTTCTAGACCAT

BO20694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-RB 315 CG7424-PB 1..312 17..328 1560 100 Plus
RpL36A-RA 315 CG7424-PA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-RB 514 CG7424-RB 85..396 17..328 1560 100 Plus
RpL36A-RA 457 CG7424-RA 35..346 17..328 1560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8042439..8042614 194..19 880 100 Minus
2L 23513712 2L 8041991..8042127 328..192 685 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:39:28 has no hits.

BO20694.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:51 Download gff for BO20694.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 32..343 17..330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:36 Download gff for BO20694.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 35..346 17..330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:48 Download gff for BO20694.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 35..346 17..330 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:48 Download gff for BO20694.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8041989..8042125 194..330 98 <- Minus
2L 8042440..8042615 17..193 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:36 Download gff for BO20694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041989..8042125 194..330 98 <- Minus
arm_2L 8042440..8042615 17..193 99   Minus

BO20694.pep Sequence

Translation from 16 to 346

> BO20694.pep
MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGG
QTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ
MIQFASFLDH

BO20694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-PB 104 CG7424-PB 1..104 1..104 562 100 Plus
RpL36A-PA 104 CG7424-PA 1..104 1..104 562 100 Plus