BO20708.complete Sequence
1564 bp assembled on 2010-10-20
GenBank Submission: KX797156
> BO20708.complete
GAAGTTATCAGTCGACATGTTCTGGCTGGGATTCGGATTGCTGTTGCTCG
CGTTGTCCCTATACCTGCTATATGTCTTCGAGCGGCAGAGCAGGATCGAC
CGGCTCACCCACAAATGGCCAGCCCCACCGGCCCTGCCATTCATTGGCCA
TCTGCACATTCTAGCCAAATTGGTGGGACCGCATCCACTTCGACGAGCCA
CCGAAATGATCAACGAACATCTACACGATCATCGAGCAAAACTATGGATG
GGCACTAAGCTCTATCTCGTGGACTGCAATCCCAAGGATATACAGGCTCT
GTGCAGTGCCCAGCAGCTGCTGCAGAAGACCAACGACTATAGGGTCTTCG
AGAACTGGCTCTGCGAGGGTCTCTTCACCAGTGGATTCGAGAAGTGGTCC
CATCGCCGGAAGATCGTAATGCCGGCCTTCAACTACACCATGATCAAACA
GTTTGTTGCCGTCTTTGAGAAGCAGTCGAGGATTCTTTTGACGAATGTCG
CTAAATTTGCCGAGTCCGGGGATCAAATTGACTTTCTGCAACTGATCAGC
TGCTTCACTTTGGACACTATTTGTGAAACGGCCCTCGGAGTCTCTGTGGG
TTCGCAGTCGAGCGCCAAGTCGGAATACCTCGATGCTGTTAAATCAATCC
TTGTCATCATCGATAAGCGACTGAAGAACATCTTCTACCGCAACTCGTTT
ATTTTCAAACGCACATCGCATTATAAGCGAGAACAGGAGCTGATAAAAAC
GCTTCACGGATTCACAGAGGGCATTATACAGAAACGTATTGATGAAATCA
ACCAGGATGCAGAGAATCGCAACTACCAGAGCAGTGATGCGGAATTGGAC
GGAGTGAAGCGGACCCTATGCTTTCTGGACACCTTGCTACTGTCCAAGGG
TCCCGATGGCAAGCCTTTGACAGTCAAGGATATTCGCGAGGAAGTGGACA
CCATCATATTTGGGGGATTCGATCTCACGGCCACCACCCTCAACTTTTTC
ATGTATAACATGACTCTTCATCCGGAGCACCAGCAGCGATGTCGCGAGGA
GGTGTGGTCGGTATGCGGCAAGGACAAAAGTGAACCCATCTCCATAGAGC
AGGTGCGCCAACTGGAGTTCCTGGAGGCGTGTATAAAGGAAACTCTGCGG
ATGTATCCTTCAGGTCCACTCACTGCCAGAAAAGCCACAGCCAACTGCAC
AATCAATGACTTCTTCATACCGAAGGGTAGCGATGTAATCATTTCACCAA
TTTACATGGGACGTTGCAAGGACTTCTTTCCGGATCCGATGGTCTTCAAG
CCAGATCGCTGGGCAATTGGAGCGGAGCCCAAAATTGAGGCCACCACTTT
TATACCCTTTATGGCGGGGGCTCGGAGTTGCATGGGCCAGCGGTATGCGA
TGGTCATGCTCAAAATGGTGCTAGCTCACCTGCTGAGGAACTTCCTGTTC
GAGCCCCTTGGCGAGCGACAGGTGAAGTTGAAGCTCAACTTTGTGATCAC
GCTGCATACCGTTGAACCCTATCTATGTAGAGCTAAAAATCTAGATGCAA
GCTTTCTAGACCAT
BO20708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-RB | 1533 | CG5137-PB | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| Cyp312a1-RA | 1533 | CG5137-PA | 1..1530 | 17..1546 | 7650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-RB | 3383 | CG5137-RB | 624..2153 | 17..1546 | 7650 | 100 | Plus |
| Cyp312a1-RA | 1628 | CG5137-RA | 30..1559 | 17..1546 | 7650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18131438..18132066 | 645..17 | 3145 | 100 | Minus |
| 3L | 28110227 | 3L | 18130571..18131130 | 1205..646 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 18130170..18130510 | 1546..1206 | 1705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:27:48 has no hits.
BO20708.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:58 Download gff for
BO20708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 173..1697 | 22..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:08 Download gff for
BO20708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 35..1559 | 22..1548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:35 Download gff for
BO20708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp312a1-RA | 35..1559 | 22..1548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:35 Download gff for
BO20708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18130167..18130510 | 1206..1548 | 99 | <- | Minus |
| 3L | 18130571..18131130 | 646..1205 | 100 | <- | Minus |
| 3L | 18131438..18132061 | 22..645 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:08 Download gff for
BO20708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18123267..18123610 | 1206..1548 | 99 | <- | Minus |
| arm_3L | 18123671..18124230 | 646..1205 | 100 | <- | Minus |
| arm_3L | 18124538..18125161 | 22..645 | 100 | | Minus |
BO20708.pep Sequence
Translation from 16 to 1564
> BO20708.pep
MFWLGFGLLLLALSLYLLYVFERQSRIDRLTHKWPAPPALPFIGHLHILA
KLVGPHPLRRATEMINEHLHDHRAKLWMGTKLYLVDCNPKDIQALCSAQQ
LLQKTNDYRVFENWLCEGLFTSGFEKWSHRRKIVMPAFNYTMIKQFVAVF
EKQSRILLTNVAKFAESGDQIDFLQLISCFTLDTICETALGVSVGSQSSA
KSEYLDAVKSILVIIDKRLKNIFYRNSFIFKRTSHYKREQELIKTLHGFT
EGIIQKRIDEINQDAENRNYQSSDAELDGVKRTLCFLDTLLLSKGPDGKP
LTVKDIREEVDTIIFGGFDLTATTLNFFMYNMTLHPEHQQRCREEVWSVC
GKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTARKATANCTINDFF
IPKGSDVIISPIYMGRCKDFFPDPMVFKPDRWAIGAEPKIEATTFIPFMA
GARSCMGQRYAMVMLKMVLAHLLRNFLFEPLGERQVKLKLNFVITLHTVE
PYLCRAKNLDASFLDH
BO20708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp312a1-PB | 510 | CG5137-PB | 1..510 | 1..510 | 2685 | 100 | Plus |
| Cyp312a1-PA | 510 | CG5137-PA | 1..510 | 1..510 | 2685 | 100 | Plus |
| Cyp4d1-PA | 512 | CG3656-PA | 1..508 | 1..507 | 955 | 39.5 | Plus |
| Cyp4d1-PB | 503 | CG3656-PB | 3..499 | 9..507 | 912 | 38.1 | Plus |
| Cyp4c3-PA | 535 | CG1438-PA | 33..511 | 9..485 | 728 | 33.5 | Plus |
