Clone BO20710 Report

Search the DGRC for BO20710

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:207
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptKua-RA
Protein status:BO20710.pep: Imported from assembly
Sequenced Size:964

Clone Sequence Records

BO20710.complete Sequence

964 bp assembled on 2009-05-13

GenBank Submission: KX797219

> BO20710.complete
GAAGTTATCAGTCGACATGGCGGCCAAGAGCGATATGGATATTCTGGCCA
ACTCCATGTACGAGGACGATCCCAATGGCAACCTAGCGCCCGCCACCACC
AAGGATAAGGAATCAGTCAAGCCGGAGGAGCTGAAGGTCACCCCCGCTGG
CACCAAAGCAACATCCCCCCCCAACTCGGCGACCTTAGTTTCGACTTCTC
CGCGATGGGGTCCGCAGAATAAGGGCGCCCAGGAACTAGCCTTGTTGTAC
AGTCCAGGAAAACGTGCCCAGGAAATCATTTGCGTCTACACCTGCATTGG
CCTTATGATCATTAACCTAGCCCTGATTGTTAGACACTTGCGATTGGAGC
GGATTAGTGTCGCCTTTCTGTCCGCCCTGTGCGGCATTATAACGGCCGAC
TTTGCTTCCGGCTTGGTTCACTGGGCGGCAGACACCTGGGGATCGGTGGA
CATACCGATGATTGGAAAGAACTTCCTGCGACCCTTTCGCGAGCATCATC
TGGATCCCACATCCATAACGCGACACGATTTCATTGAGACAAATGGCGAC
AACTTTATGGTTGGCATACCAATTCTCGGCTACTTGGCCCACTATTTTTA
CATCAGGACGCCCAGCGAGATACAGCAACACTTCGGCTGGATAGCCTATG
TGTTCCTCTGCTCCATATTCGTGGCCATGACCAATCAGATACACAAGTGG
TCGCATACCTATTGGGGATTGCCGAGGTGGGTCCTGTTACTCCAGAGCTG
TCACATCATCCTGCCACGCAAGCATCATCGCATCCATCACGTGGCGCCAC
ATGAGACCTACTTTTGCATCACCACCGGGTGGCTTAACTGGCCACTGGAA
CGCATCAGATTCTGGTCAACATTCGAGCTCATCATCGAGCATTTTACGGG
CCTCAAGCCCCGCGATGACGACCTGAAGTGGGCCAAGAAACTCACAGCAA
GCTTTCTAGACCAT

BO20710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
Kua-RC 933 CG10723-PC 1..930 17..946 4650 100 Plus
Kua-RD 933 CG10723-PD 1..930 17..946 4650 100 Plus
Kua-RB 933 CG10723-PB 1..930 17..946 4650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Kua-RC 1859 CG10723-RC 594..1523 17..946 4650 100 Plus
Kua-RD 1897 CG10723-RD 106..1035 17..946 4650 100 Plus
Kua-RB 1648 CG10723-RB 383..1312 17..946 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20100947..20101188 17..258 1210 100 Plus
2L 23513712 2L 20101910..20102130 468..688 1105 100 Plus
2L 23513712 2L 20101628..20101842 255..469 1075 100 Plus
2L 23513712 2L 20102193..20102364 687..858 860 100 Plus
2L 23513712 2L 20102424..20102513 857..946 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:36:36 has no hits.

BO20710.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:48 Download gff for BO20710.complete
Subject Subject Range Query Range Percent Splice Strand
Kua-RA 1..930 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:57 Download gff for BO20710.complete
Subject Subject Range Query Range Percent Splice Strand
Kua-RB 383..1312 17..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:03 Download gff for BO20710.complete
Subject Subject Range Query Range Percent Splice Strand
Kua-RB 383..1312 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:03 Download gff for BO20710.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20100947..20101187 17..257 100 -> Plus
2L 20101631..20101842 258..469 100 -> Plus
2L 20101912..20102130 470..688 100 -> Plus
2L 20102195..20102364 689..858 100 -> Plus
2L 20102426..20102513 859..948 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:57 Download gff for BO20710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20100947..20101187 17..257 100 -> Plus
arm_2L 20101631..20101842 258..469 100 -> Plus
arm_2L 20101912..20102130 470..688 100 -> Plus
arm_2L 20102195..20102364 689..858 100 -> Plus
arm_2L 20102426..20102513 859..948 97   Plus

BO20710.pep Sequence

Translation from 16 to 964

> BO20710.pep
MAAKSDMDILANSMYEDDPNGNLAPATTKDKESVKPEELKVTPAGTKATS
PPNSATLVSTSPRWGPQNKGAQELALLYSPGKRAQEIICVYTCIGLMIIN
LALIVRHLRLERISVAFLSALCGIITADFASGLVHWAADTWGSVDIPMIG
KNFLRPFREHHLDPTSITRHDFIETNGDNFMVGIPILGYLAHYFYIRTPS
EIQQHFGWIAYVFLCSIFVAMTNQIHKWSHTYWGLPRWVLLLQSCHIILP
RKHHRIHHVAPHETYFCITTGWLNWPLERIRFWSTFELIIEHFTGLKPRD
DDLKWAKKLTASFLDH

BO20710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Kua-PC 310 CG10723-PC 1..310 1..310 1687 100 Plus
Kua-PD 310 CG10723-PD 1..310 1..310 1687 100 Plus
Kua-PB 310 CG10723-PB 1..310 1..310 1687 100 Plus
Kua-PA 310 CG10723-PA 1..310 1..310 1687 100 Plus