Clone BO20713 Report

Search the DGRC for BO20713

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:207
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42A-RA
Protein status:BO20713.pep: Imported from assembly
Sequenced Size:745

Clone Sequence Records

BO20713.complete Sequence

745 bp assembled on 2009-05-13

GenBank Submission: KX795549

> BO20713.complete
GAAGTTATCAGTCGACATGGCTAATCCGTTTCGCTGGTGTCGAGTGTCGC
ACGACTGCGTGTTCCAGATTAATGTGGTTCTGGTGGTGGTCGGAGTGATC
TTTCTGCTTGACGTGCTCAGCCACCTTTATCTGAAGGCGGTCATGTTTCC
AGGCCTTCGTCTATACCCGGTAGCCTTGCGCCCCTGGCTCTTTTGGGTGC
GCGCTTTGACAATGGTTGCCTACATTTTGAACGCTGTTCTTGGGATTCAC
ATGGCCCGACAACCCACCGTCTTGAAGTACGCTGGCTATATGCTCGTTGG
AAGCGTGGTGTTGCTGTACACAATAAGCATCGGAGTGACTCGCTTCATGT
ACCGCAAAAGATTCGAGTTCTTTGCCGAGATGCTGGTGCTGCAGATGTGG
GTGAGAGATAGACTTGGCAAGGTTGAAGTAGAGTTCGAGTGCTGCGGAAG
GTCCAGCGTAGTTGACTACCAGACAGCATCGAGCAACCGCACCTGGCCCA
TTGGCTCTTGCTGCGGGAAGCAGAACTGCACCGGCTGCACTGCGAAGCTT
AGCCAGTACCTGTGGACTATCGAGATGGATGTGGCAAGGGATAATATTAT
CGTATCCGTTCTCTTGTTTGTGGCGATGATCGTCATGGTTTTACACTTTA
AAGATGTGCAATCGCTCGACGACACTAGTGATGTGGATGAGTCTTCAGAA
CTGGTAGACGACTCGGACGCCAAAGAAGCAAGCTTTCTAGACCAT

BO20713.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-RB 714 CG14468-PB 1..711 17..727 3555 100 Plus
Tsp42A-RA 714 CG14468-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-RB 1179 CG14468-RB 57..771 13..727 3560 99.9 Plus
Tsp42A-RA 936 CG14468-RA 57..771 13..727 3560 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5795469..5796183 13..727 3560 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 08:59:57 has no hits.

BO20713.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:15 Download gff for BO20713.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 1..711 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:04 Download gff for BO20713.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 61..771 17..729 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:13 Download gff for BO20713.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42A-RA 61..771 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:13 Download gff for BO20713.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5795473..5796183 17..729 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:04 Download gff for BO20713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1682978..1683688 17..729 99   Plus

BO20713.pep Sequence

Translation from 16 to 745

> BO20713.pep
MANPFRWCRVSHDCVFQINVVLVVVGVIFLLDVLSHLYLKAVMFPGLRLY
PVALRPWLFWVRALTMVAYILNAVLGIHMARQPTVLKYAGYMLVGSVVLL
YTISIGVTRFMYRKRFEFFAEMLVLQMWVRDRLGKVEVEFECCGRSSVVD
YQTASSNRTWPIGSCCGKQNCTGCTAKLSQYLWTIEMDVARDNIIVSVLL
FVAMIVMVLHFKDVQSLDDTSDVDESSELVDDSDAKEASFLDH

BO20713.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42A-PB 237 CG14468-PB 1..237 1..237 1236 100 Plus
Tsp42A-PA 237 CG14468-PA 1..237 1..237 1236 100 Plus