BO20727.complete Sequence
799 bp assembled on 2009-05-13
GenBank Submission: KX798254
> BO20727.complete
GAAGTTATCAGTCGACATGATCAAGAACGCCGTTTCCCTGGTGACCGGAG
GAGCCTCTGGACTGGGCCGCGCCACCGCCGAGCGCCTGGCCAAGCAGGGC
GCCAGCGTGATCCTGGCCGATCTGCCCTCCTCCAAGGGCAACGAGGTGGC
CAAGGAGCTGGGCGACAAGGTGGTCTTCGTGCCCGTGGACGTGACCTCCG
AGAAGGATGTGAGCGCCGCTCTGCAGACGGCCAAGGATAAGTTCGGTCGT
CTGGATCTGACTGTGAACTGTGCGGGCACAGCCACCGCGGTAAAGACGTT
CAACTTCAACAAGAACGTGGCGCACCGCCTGGAAGACTTCCAGCGGGTGA
TCAACATCAATACCGTGGGCACGTTCAATGTGATCCGTCTGTCCGCCGGA
CTGATGGGCGCCAATGAGCCCAATCAGGATGGACAGCGCGGCGTGATCGT
GAACACCGCCTCGGTGGCTGCCTTTGATGGCCAGATCGGCCAGGCGGCCT
ACTCCGCCTCCAAGGCAGCCGTGGTGGGCATGACCCTGCCCATTGCCCGT
GACTTGAGCACCCAGGGCATACGTATCTGCACCATTGCACCGGGTTTGTT
CAACACGCCTATGCTGGCCGCCCTGCCGGAGAAGGTGCGCACCTTCCTGG
CCAAGTCCATACCGTTCCCGCAGCGCCTGGGCGAGCCCAGTGAGTACGCC
CACCTGGTGCAGGCCATCTACGAGAATCCGCTGCTCAACGGCGAGGTCAT
CCGTATCGACGGTGCTCTGCGCATGATGCCCGCAAGCTTTCTAGACCAT
BO20727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-RA | 768 | CG7113-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
| scu-RB | 381 | CG7113-PB | 1..378 | 404..781 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-RA | 1034 | CG7113-RA | 124..888 | 17..781 | 3825 | 100 | Plus |
| scu-RB | 1134 | CG7113-RB | 232..988 | 25..781 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18091950..18092707 | 24..781 | 3790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:37:55 has no hits.
BO20727.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:11 Download gff for
BO20727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 137..901 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:21 Download gff for
BO20727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 135..899 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:27 Download gff for
BO20727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scu-RA | 124..888 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:27 Download gff for
BO20727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18091950..18092707 | 24..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:21 Download gff for
BO20727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17985983..17986740 | 24..783 | 99 | | Plus |
BO20727.pep Sequence
Translation from 16 to 799
> BO20727.pep
MIKNAVSLVTGGASGLGRATAERLAKQGASVILADLPSSKGNEVAKELGD
KVVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKN
VAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIVNTASV
AAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAPGLFNTPML
AALPEKVRTFLAKSIPFPQRLGEPSEYAHLVQAIYENPLLNGEVIRIDGA
LRMMPASFLDH
BO20727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scu-PA | 255 | CG7113-PA | 1..255 | 1..255 | 1268 | 100 | Plus |
| scu-PB | 126 | CG7113-PB | 1..126 | 130..255 | 636 | 100 | Plus |
| CG3603-PB | 249 | CG3603-PB | 5..249 | 1..252 | 302 | 33.2 | Plus |
| CG3603-PA | 249 | CG3603-PA | 5..249 | 1..252 | 302 | 33.2 | Plus |
| CG12171-PA | 257 | CG12171-PA | 5..229 | 3..234 | 225 | 29.8 | Plus |
