Clone BO20728 Report

Search the DGRC for BO20728

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:207
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG13919-RA
Protein status:BO20728.pep: Imported from assembly
Sequenced Size:427

Clone Sequence Records

BO20728.complete Sequence

427 bp assembled on 2009-05-13

GenBank Submission: KX797675

> BO20728.complete
GAAGTTATCAGTCGACATGACACTGGCACACCGGGCGCTCTTCACTTGGT
TTATCGTCCTGGTCTTCCTGATTCTTCTGTGTCTCCGCCTGGACCCACGC
ACCACCTGGAATTGGTTCGTCACCTTTACGCCACTCTGGTTCTTCGATGT
GATCATTATCATCTACGTGATCATTAAATTTATCCGCAAGTGGCGGAACC
TAACCTGCCTGACGGATCTCCTGTTCCTCTACAAATGGAACATTGCCGGC
GTCCTGCTGACCATCGCCTCCCAAGTGATGATCTGCCTAACGCTGGAGTA
CCCGCAACAGATTCCCATATACGTGACCGTTGCCCCGGTCATCCTGCTGC
TGAGCACCGCCATCTTCTATGTTGGCAGCAGGCTGGGAAAACGAGAGGGC
TGGATACAGGCAAGCTTTCTAGACCAT

BO20728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13919-RA 396 CG13919-PA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13919-RA 517 CG13919-RA 76..468 17..409 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1645542..1645934 17..409 1965 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:12:37 has no hits.

BO20728.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:10 Download gff for BO20728.complete
Subject Subject Range Query Range Percent Splice Strand
CG13919-RA 1..393 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:33 Download gff for BO20728.complete
Subject Subject Range Query Range Percent Splice Strand
CG13919-RA 76..468 17..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:48 Download gff for BO20728.complete
Subject Subject Range Query Range Percent Splice Strand
CG13919-RA 76..468 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:48 Download gff for BO20728.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1645542..1645934 17..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:33 Download gff for BO20728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1645542..1645934 17..411 99   Plus

BO20728.pep Sequence

Translation from 16 to 427

> BO20728.pep
MTLAHRALFTWFIVLVFLILLCLRLDPRTTWNWFVTFTPLWFFDVIIIIY
VIIKFIRKWRNLTCLTDLLFLYKWNIAGVLLTIASQVMICLTLEYPQQIP
IYVTVAPVILLLSTAIFYVGSRLGKREGWIQASFLDH

BO20728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13919-PA 131 CG13919-PA 1..131 1..131 693 100 Plus