Clone BO20736 Report

Search the DGRC for BO20736

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:207
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG13541-RA
Protein status:BO20736.pep: Imported from assembly
Sequenced Size:550

Clone Sequence Records

BO20736.complete Sequence

550 bp assembled on 2009-05-13

GenBank Submission: KX795377

> BO20736.complete
GAAGTTATCAGTCGACATGGGACGCAAAGGCCACAAGACTAGAAGGAAAG
TTAAAGTCCACTCGAAGGTCCATCCTCCTCAGAAAATTAAAGCGAAGCTG
CCGAAAAGAGATAAACGTAGCACACTTCGTCCCAAGATTAATAATTCGAA
GGTTTTTCACGTGAACTGCTGCAAGTACAAGATCCGTTCGAGACCCATGA
GGCGCAATCAGTGCAACCTGGCCACCCAGTGCCCCTCCCACACGGTCGCC
ATCGCCCCGTCTGTGCCGCTCCTGCATCATCCTGTCCGGCGGAAGGTGGT
CCATATGCCGGAAACCGTGGTCATGCACATGCGGAATATGGAGGACGCCC
GCCGAGTGGCGGTTAAGCACAGAAGAACCCTTATTCAAACCCATGTTCCT
TCGCCGGATGTGGATGATGACGAAGATACACACCAAATCGATCGGAGGTC
AAGGCAAGCCTATAGGATGGGTCAAATGAGACCCTTATCCAGCGACGTGG
ATGTGGATGACATGGATGTGGACCCGTTTCAGGCAAGCTTTCTAGACCAT

BO20736.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13541-RB 519 CG13541-PB 1..516 17..532 2580 100 Plus
CG13541-RA 519 CG13541-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13541-RB 1528 CG13541-RB 78..593 17..532 2580 100 Plus
CG13541-RA 986 CG13541-RA 78..593 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23284304..23284819 17..532 2580 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:49 has no hits.

BO20736.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:12 Download gff for BO20736.complete
Subject Subject Range Query Range Percent Splice Strand
CG13541-RA 25..540 17..534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:03 Download gff for BO20736.complete
Subject Subject Range Query Range Percent Splice Strand
CG13541-RA 78..593 17..534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:56 Download gff for BO20736.complete
Subject Subject Range Query Range Percent Splice Strand
CG13541-RA 78..593 17..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:56 Download gff for BO20736.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23284304..23284819 17..534 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:03 Download gff for BO20736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19171827..19172342 17..534 99   Plus

BO20736.pep Sequence

Translation from 16 to 550

> BO20736.pep
MGRKGHKTRRKVKVHSKVHPPQKIKAKLPKRDKRSTLRPKINNSKVFHVN
CCKYKIRSRPMRRNQCNLATQCPSHTVAIAPSVPLLHHPVRRKVVHMPET
VVMHMRNMEDARRVAVKHRRTLIQTHVPSPDVDDDEDTHQIDRRSRQAYR
MGQMRPLSSDVDVDDMDVDPFQASFLDH

BO20736.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13541-PB 172 CG13541-PB 1..172 1..172 920 100 Plus
CG13541-PA 172 CG13541-PA 1..172 1..172 920 100 Plus