BO20760.complete Sequence
1030 bp assembled on 2009-05-13
GenBank Submission: KX796752
> BO20760.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGGACGCATTCGAGCCAGCTCCATCGAGATGCGTCTGCTGGAGAT
GCAGCGAAAGTTGTCAGCCATTGCCGAAATACCGAAAATCCTGTGCTCCA
CTTTGGCCACCGTGTCGCAGAATTTTGGCCGAATGAGTGAATCGGAGGTG
GATGAGGATGACGTCGGGGAGGAGGAGGCCTATGTGCAGCGGAAGTTCTC
CTACGACGAGGATGCCCTTGACTTTGAGCTGAGGAACGGGGAACAGGCAG
GTGACACTGACAGTGATGAGGAAGATTTGGTGTTGGTTCGGGAGGAGGAT
GCTGAGGACGTGGATGTACCGAAAGGTGCCAAGCAATCAAAGCTGCTGAA
GGATGTCACGCCGGAATCGGATTATGCATCGGAAGCCAATTATCCGGCAA
ATGAGGCGAGCGATGACACGGAATCCGACGATGAGGATGAGCCGGGCAGC
ACGGTATATTTCATGAAACTGCCAGCGGCCGCCGCCGAGGATACGTATTC
TTCTACGGAGGACGAGGATGACAGCGATTTCCTGAACACCACCTACACGT
GGAATCTCCGCAATGTGCCCAAGCTGCGAATTAACGATGCCGAGGCCGAA
GGTGAACTGACACTGGGACATCAGGCGCGGGAGGTGCCTCAGCAGGAGCA
GCCACAGGAGAAGCAGCCTTGTCTGGAACCGGAGCCACCGAAGGTGCGCC
CAGCCACGCCCACACCGAAGGCTCCACCTCAAGAATCCGCCGAGGGGCAG
ACACAAAAGTTGCTATTCAGACTGGATAAACTGGAACGATCCTGGCCCTG
GGCAGACCGCGAGAAGATCATATACAAGCAATCCACTTGCCATTTGGTGC
CACGAAAGCCACTGGGATTGGTGGGACAGCGAATGCAGCTGCTGCTGAAG
GACAAAAAGGAGGCAAGCTTTCTAGACCAT
BO20760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RE | 1359 | CG42319-PE | 359..1356 | 15..1012 | 4990 | 100 | Plus |
| CG42319-RF | 999 | CG42319-PF | 1..996 | 17..1012 | 4980 | 100 | Plus |
| CG42319-RD | 756 | CG42319-PD | 359..451 | 15..107 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RF | 2046 | CG42319-RF | 250..1247 | 15..1012 | 4990 | 100 | Plus |
| CG42319-RE | 2682 | CG17042-RA | 886..1883 | 15..1012 | 4990 | 100 | Plus |
| CG42319-RD | 1466 | CG42319-RD | 886..978 | 15..107 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13264369..13265121 | 107..859 | 3765 | 100 | Plus |
| 2R | 25286936 | 2R | 13262906..13262998 | 16..108 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 13265453..13265537 | 928..1012 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 13265319..13265389 | 858..928 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:03:18 has no hits.
BO20760.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:40 Download gff for
BO20760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RF | 223..1218 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:37 Download gff for
BO20760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 888..1883 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:19 Download gff for
BO20760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 888..1883 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:19 Download gff for
BO20760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13262907..13262997 | 17..107 | 100 | -> | Plus |
| 2R | 13264370..13265121 | 108..859 | 100 | -> | Plus |
| 2R | 13265321..13265388 | 860..927 | 100 | -> | Plus |
| 2R | 13265453..13265537 | 928..1014 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:37 Download gff for
BO20760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9150412..9150502 | 17..107 | 100 | -> | Plus |
| arm_2R | 9151875..9152626 | 108..859 | 100 | -> | Plus |
| arm_2R | 9152826..9152893 | 860..927 | 100 | -> | Plus |
| arm_2R | 9152958..9153042 | 928..1014 | 97 | | Plus |
BO20760.pep Sequence
Translation from 16 to 1030
> BO20760.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSGRIRASSIEMRLLEMQRKLS
AIAEIPKILCSTLATVSQNFGRMSESEVDEDDVGEEEAYVQRKFSYDEDA
LDFELRNGEQAGDTDSDEEDLVLVREEDAEDVDVPKGAKQSKLLKDVTPE
SDYASEANYPANEASDDTESDDEDEPGSTVYFMKLPAAAAEDTYSSTEDE
DDSDFLNTTYTWNLRNVPKLRINDAEAEGELTLGHQAREVPQQEQPQEKQ
PCLEPEPPKVRPATPTPKAPPQESAEGQTQKLLFRLDKLERSWPWADREK
IIYKQSTCHLVPRKPLGLVGQRMQLLLKDKKEASFLDH
BO20760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-PF | 332 | CG42319-PF | 1..332 | 1..332 | 1723 | 100 | Plus |
| CG42319-PE | 452 | CG17042-PA | 121..452 | 1..332 | 1723 | 100 | Plus |
| CG42319-PC | 131 | CG17041-PC | 1..30 | 1..30 | 160 | 100 | Plus |
| CG42319-PB | 131 | CG17041-PB | 1..30 | 1..30 | 160 | 100 | Plus |
| CG42319-PA | 131 | CG17041-PA | 1..30 | 1..30 | 160 | 100 | Plus |
