Clone BO20761 Report

Search the DGRC for BO20761

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:207
Well:61
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO20761.pep: Imported from assembly
Sequenced Size:847

Clone Sequence Records

BO20761.complete Sequence

847 bp assembled on 2009-05-13

> BO20761.complete
GAAGTTATCAGTCGACATGCTCCTAATTGGATTACTAATGCTACTCCATG
CCGGCCTCCAAGGAGCCCAGTGTGTTGCCTTCTACACGGAAAAACCCTCC
TATATTGAGTCCTGCAAGATTTATGAACCGGAGTTCACCAAGTGCTCAAC
TCGTTCAATACAGGCATTTATGAACCAGCTCGTCAAAGGTGTGCCCGAAA
TAGAGGAATCCTTTGGACCCATCGATCCCATGAGGCAGGAACAGCTGGTG
TTCAAGCAGGATAACAGCGACGTGGCCACCCTTTCCGCCAATCTTACGGA
TATGCTGATCAGGGGCTTTGGCAAAATGCTGATCAAGGAGAGCAAAGTCA
GCAAAAAGGATTTCAGCTGGCTAACTAAGATCTACCTGCCCCAAATGCGA
ATAGATGGTCACTACAAAATGGTCGGTCGCATTTTGCTCGTGCCTCTGCA
GGGAAATGGAAAAATAGTCATGGAAATAGATGATCTGGACATACTGATGA
CCACCAAAACACGCCTCTACGAGAAGGGCGGCTATACATTTTACAACGTG
ACATCCGTGAAGGTAAAAGTGGACGTCGGCAAAGTTCGCACCAGATTGGA
TAACCTCTTCAACGGGCACAGCAAGGAGGTGGAAGATAGCACCAATCAGT
TCTTTAACGACAATTGGAAGGATGTCTTCGAGGCACTGCGTCCGCTGGTG
GTTGAAACCGTGGAAAGAACGCTACTAGATCTACTCCACAAGACATTTGC
CCTGTTTCCGGCCAGCTTCTTTGTGGAGGACATACCCACCTCCTTAACCT
TGTATGGTCGCAAGTCACACATGATCACTGCAAGCTTTCTAGACCAT

BO20761.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-RA 795 CG17189-PA 1..792 38..829 3945 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-RA 995 CG17189-RA 71..884 16..829 4055 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27102455..27102806 478..829 1760 100 Plus
3R 32079331 3R 27101823..27101981 187..345 795 100 Plus
3R 32079331 3R 27102263..27102396 346..479 655 99.3 Plus
3R 32079331 3R 27101673..27101768 96..191 480 100 Plus
3R 32079331 3R 27101476..27101555 16..95 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:55:44 has no hits.

BO20761.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:09 Download gff for BO20761.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..792 38..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:53 Download gff for BO20761.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 72..884 17..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:48 Download gff for BO20761.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 72..884 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:48 Download gff for BO20761.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27101825..27101981 189..345 100 -> Plus
3R 27102263..27102396 346..479 99 -> Plus
3R 27101477..27101555 17..95 100 -> Plus
3R 27101673..27101765 96..188 100 -> Plus
3R 27102457..27102806 480..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:53 Download gff for BO20761.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22927547..22927703 189..345 100 -> Plus
arm_3R 22927985..22928118 346..479 99 -> Plus
arm_3R 22927199..22927277 17..95 100 -> Plus
arm_3R 22927395..22927487 96..188 100 -> Plus
arm_3R 22928179..22928528 480..831 99   Plus

BO20761.pep Sequence

Translation from 16 to 847

> BO20761.pep
MLLIGLLMLLHAGLQGAQCVAFYTEKPSYIESCKIYEPEFTKCSTRSIQA
FMNQLVKGVPEIEESFGPIDPMRQEQLVFKQDNSDVATLSANLTDMLIRG
FGKMLIKESKVSKKDFSWLTKIYLPQMRIDGHYKMVGRILLVPLQGNGKI
VMEIDDLDILMTTKTRLYEKGGYTFYNVTSVKVKVDVGKVRTRLDNLFNG
HSKEVEDSTNQFFNDNWKDVFEALRPLVVETVERTLLDLLHKTFALFPAS
FFVEDIPTSLTLYGRKSHMITASFLDH

BO20761.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-PA 264 CG17189-PA 1..264 8..271 1365 100 Plus
CG14259-PA 289 CG14259-PA 36..282 20..266 885 65.2 Plus
CG14457-PB 271 CG14457-PB 24..265 22..265 559 43.9 Plus
CG14457-PC 270 CG14457-PC 24..264 23..265 554 43.2 Plus
CG14457-PA 144 CG14457-PA 1..138 127..265 373 48.9 Plus