BO20795.complete Sequence
1750 bp assembled on 2010-10-20
GenBank Submission: KX793997
> BO20795.complete
GAAGTTATCAGTCGACATGGCCCAAAAGCAGGTGCTAGTCTTAAACCTAT
TTTGCCTGGGCTCACTATTTTTCAAAACAGTGCCAGCTTCCACGGAATAC
AACAAATACGTGGCGCAGATATTTCAAAAATACGGCAACGGCGGGACAAT
CAACTTTGAGGGTCTTGAGCATTTGATGTTCAGCCTGAACTTGGGTCAAA
TCCAATTCGATCCCTCGCACACGATCGATCAGCATCGACCTCAGGGATAC
TCGAACGAGATGCCGCATGCCACAAATGTAACGTATTACTTTGAGCCGAC
ACGAGTCAATGCCACCGATGAGGAAGCTTTGGAGCTGCAAATCTCTCCTC
GTGGCAATCACTCAAATTCACAGTCGGAGGCCGAGGTTCCGGAGTTCCTA
GAAATTCATGACCCCAAGCACCGACATCCGAGGGAGAGTTCTGAACCTGT
TGCCGCTTGCTTATCACCGAAGTCTTTACTTTCCCTCATCGTGAACCACA
ACGATCTCCACAAAAACATTGCCTACCGCAAGCTGCTCATTAAGAATGAC
GTTAGCTCAACTGATGGCGTCCACAATTCTGAAGAGGAATACAACGAATT
CATCAACTCGGTGCGGATCACTCCGCGAGCTTTTATGAAACTCTGTCCAG
CTCTATTAGCCCAGATCGATAATGGAGTTTGCAAGCAACCAGCTGTACGA
TCAGTAAACCTTAACGATAAGAACCAGAAGATATGGTACGCTTGGATCTA
TGCCAGCATCACTATGCTTATACTGTCCGCTTGCGGATTGCTGGGCATTC
TTCTGGTTCCTTTGATGAAGTCGGCTGCCTATCAGGAAATTCTCAAGTTC
CTAGTTTCCATCGCTGTGGGCACTTTAGCTGGCGATGCCCTGATGCACTT
GCTCCCCCATGCCCTTTTCAAGGAGGAAAAGCACGAGGAGGAAGTCACTG
GTATCAATCCCTTGGAATCTGATCACAAACATAGCAATGAGGCGGCTCTG
CTATGTGGTTGTACTTTCCTGGCTGCTCTATTCATGTATATGCTGGAGAA
CCTGATTCCGCTGCTAAAGGGCGGTAAGCCGGGTCATGGACATAGCCACG
GACATGGTCACAGCCACGGCCGCAGTCATGGACATATGGAGAAGCCAGCT
GCAAAGGATGCTATTGATCTGCCACCTCCTCGAGAGCTCAATGTGATGTT
GCAGGAGGCCAAGCTGGATGAGAAGACCCCCGATCGACCGCTCACCCCAG
TAGCCTTCATGGTAATCATCGGAGATGGCTTGCACAATCTGACCGATGGT
CTGGCCATAGGTGCAGCCTTCGCAAGTGATCCGGTCACTGGATTTGCTAC
CGCCTTTGCCGTTCTCTGCCATGAGTTGCCACACGAACTGGGCGACTTTG
CTCTGTTGCTGCAAACAGGTGTCTCCATGCGAAGAGCCGTCTATATGAAC
ATTGTTAGCTCAGTTCTTAGCTTTGTGGGCATGTCGGTGGGTCTCTTTAT
TGCTGGAATTGGAGACGGCATGACCCAATGGATTTATGCAGCCACCGCTG
GTTCCTTCCTGTATATTGCTTTTGCCGATCTGGTGCCCACAATGAGTGTG
GCCCACAATCCGGAAAAGGCCAAAGATCCAAAGGGTATAATAATACAAAT
TTTTGGTATCCTTCTGGGTGGACTGATAATGTTGGCTATTGCCCTCAATG
AACACGATTTAGAGGGCCTGTTCAAGAGCTTTGCAAGCTTTCTAGACCAT
BO20795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-RC | 1719 | CG10006-PC | 1..1716 | 17..1732 | 8580 | 100 | Plus |
| Zip71B-RB | 1719 | CG10006-PB | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-RC | 2391 | CG10006-RC | 184..1899 | 17..1732 | 8580 | 100 | Plus |
| Zip71B-RB | 2225 | CG10006-RB | 184..1899 | 17..1732 | 8580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14996499..14997491 | 740..1732 | 4965 | 100 | Plus |
| 3L | 28110227 | 3L | 14996141..14996442 | 439..740 | 1495 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14994581..14994865 | 159..443 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 14992472..14992616 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:27:39 has no hits.
BO20795.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:57 Download gff for
BO20795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 1..1716 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:06 Download gff for
BO20795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 184..1899 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:32 Download gff for
BO20795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip71B-RB | 184..1899 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:32 Download gff for
BO20795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14994583..14994865 | 161..443 | 100 | -> | Plus |
| 3L | 14996500..14997491 | 741..1734 | 99 | | Plus |
| 3L | 14992472..14992615 | 17..160 | 100 | -> | Plus |
| 3L | 14996146..14996442 | 444..740 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:06 Download gff for
BO20795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14985572..14985715 | 17..160 | 100 | -> | Plus |
| arm_3L | 14987683..14987965 | 161..443 | 100 | -> | Plus |
| arm_3L | 14989246..14989542 | 444..740 | 100 | -> | Plus |
| arm_3L | 14989600..14990591 | 741..1734 | 99 | | Plus |
BO20795.pep Sequence
Translation from 16 to 1750
> BO20795.pep
MAQKQVLVLNLFCLGSLFFKTVPASTEYNKYVAQIFQKYGNGGTINFEGL
EHLMFSLNLGQIQFDPSHTIDQHRPQGYSNEMPHATNVTYYFEPTRVNAT
DEEALELQISPRGNHSNSQSEAEVPEFLEIHDPKHRHPRESSEPVAACLS
PKSLLSLIVNHNDLHKNIAYRKLLIKNDVSSTDGVHNSEEEYNEFINSVR
ITPRAFMKLCPALLAQIDNGVCKQPAVRSVNLNDKNQKIWYAWIYASITM
LILSACGLLGILLVPLMKSAAYQEILKFLVSIAVGTLAGDALMHLLPHAL
FKEEKHEEEVTGINPLESDHKHSNEAALLCGCTFLAALFMYMLENLIPLL
KGGKPGHGHSHGHGHSHGRSHGHMEKPAAKDAIDLPPPRELNVMLQEAKL
DEKTPDRPLTPVAFMVIIGDGLHNLTDGLAIGAAFASDPVTGFATAFAVL
CHELPHELGDFALLLQTGVSMRRAVYMNIVSSVLSFVGMSVGLFIAGIGD
GMTQWIYAATAGSFLYIAFADLVPTMSVAHNPEKAKDPKGIIIQIFGILL
GGLIMLAIALNEHDLEGLFKSFASFLDH
BO20795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-PC | 572 | CG10006-PC | 1..572 | 1..572 | 2982 | 100 | Plus |
| Zip71B-PB | 572 | CG10006-PB | 1..572 | 1..572 | 2982 | 100 | Plus |
| Catsup-PA | 449 | CG10449-PA | 132..446 | 243..559 | 428 | 32.2 | Plus |
| foi-PD | 706 | CG6817-PD | 524..694 | 361..569 | 417 | 43.1 | Plus |
| foi-PC | 706 | CG6817-PC | 524..694 | 361..569 | 417 | 43.1 | Plus |
| foi-PD | 706 | CG6817-PD | 87..334 | 68..316 | 220 | 27.2 | Plus |
