BO20803.complete Sequence
1591 bp assembled on 2010-10-20
GenBank Submission: KX796965
> BO20803.complete
GAAGTTATCAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGA
TCAGTCCGCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAG
CAGGATCCTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCA
GCTACAGCAAAGCTTCTGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAA
TTGAAAATAATAACAATAATCATATTCATCATGGCGAGACAACGTATCAC
ATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGG
TGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGA
TGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCTG
ATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGGA
CAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTCGATACCGACT
CAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAAC
TCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGAT
CAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGATG
TGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAAT
AAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGTC
GGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCCA
ACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAAC
TCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTGC
AAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATCAATTTGTCCA
TCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGTTGCCACACAG
CTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCTATTCGGAGAC
CGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGCG
TCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGCCCACTCAACG
CTGGGCAACTTCCTGGGCGTAACGACGCTGGACCAGCAGACAGCCGCTGC
CGCATCTGCGGCCACCGCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTAA
ATCTGGAGCAATATGCCGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCGG
CCGACGCAGTCGCAACTGGACGCTGCCGCAGTGCAATTCGATCCATTCCG
CCATTTGGGCTCGGCAACGGCGCCGGCCGCCACGCCCGTCTCACTGAACA
ACAATAGCTTTGGATTGACGGCGACCACGGGAACGGCGACCACGGCGCAG
CTGGGCGGTCTAAGCAAGAGTCCCACTCCCGGTGACCTTAGCTCCAAGGA
CTCGAAAAACGTCGAGGTGCCGGAAGTGATTATCGGCGCTATCCTAGGTG
CGCGTCCATATTATTATCCATACGCAAGCTTTCTAGACCAT
BO20803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RI | 1560 | CG42670-PI | 1..1557 | 17..1573 | 7785 | 100 | Plus |
ps-RD | 1752 | CG42670-PD | 1..1533 | 17..1549 | 7665 | 100 | Plus |
ps-RB | 1428 | CG42670-PB | 20..1425 | 168..1573 | 7030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-RI | 4635 | CG8144-RI | 133..1690 | 16..1573 | 7790 | 100 | Plus |
ps-RD | 2685 | CG8144-RD | 133..1666 | 16..1549 | 7670 | 100 | Plus |
ps-RB | 4508 | CG8144-RB | 158..1563 | 168..1573 | 7030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9445252..9445898 | 375..1021 | 3235 | 100 | Plus |
3R | 32079331 | 3R | 9445967..9446523 | 1017..1573 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 9436967..9437120 | 16..169 | 770 | 100 | Plus |
3R | 32079331 | 3R | 9445043..9445188 | 233..378 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9444011..9444077 | 168..234 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:27:07 has no hits.
BO20803.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:54 Download gff for
BO20803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RI | 139..1690 | 22..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:58 Download gff for
BO20803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RI | 139..1690 | 22..1575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:20 Download gff for
BO20803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ps-RI | 139..1690 | 22..1575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:20 Download gff for
BO20803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9436973..9437118 | 22..167 | 100 | -> | Plus |
3R | 9444011..9444076 | 168..233 | 100 | -> | Plus |
3R | 9445044..9445187 | 234..377 | 100 | -> | Plus |
3R | 9445255..9445895 | 378..1018 | 100 | -> | Plus |
3R | 9445969..9446523 | 1019..1575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:58 Download gff for
BO20803.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5262695..5262840 | 22..167 | 100 | -> | Plus |
arm_3R | 5269733..5269798 | 168..233 | 100 | -> | Plus |
arm_3R | 5270766..5270909 | 234..377 | 100 | -> | Plus |
arm_3R | 5270977..5271617 | 378..1018 | 100 | -> | Plus |
arm_3R | 5271691..5272245 | 1019..1575 | 99 | | Plus |
BO20803.pep Sequence
Translation from 16 to 1591
> BO20803.pep
MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF
CESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIA
SLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIREK
PDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESG
SYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLN
VSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAAS
LLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEV
VAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAAT
ASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSA
TAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVE
VPEVIIGAILGARPYYYPYASFLDH
BO20803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ps-PI | 519 | CG16765-PI | 1..519 | 1..519 | 2623 | 100 | Plus |
ps-PD | 583 | CG8144-PD | 1..511 | 1..511 | 2572 | 100 | Plus |
ps-PC | 561 | CG8144-PC | 1..489 | 1..511 | 2416 | 95.7 | Plus |
ps-PB | 475 | CG8144-PB | 8..475 | 52..519 | 2356 | 100 | Plus |
ps-PR | 780 | CG42670-PR | 231..708 | 36..511 | 2307 | 97.1 | Plus |