Clone BO20803 Report

Search the DGRC for BO20803

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:208
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptps-RI
Protein status:BO20803.pep: Imported from assembly
Sequenced Size:1591

Clone Sequence Records

BO20803.complete Sequence

1591 bp assembled on 2010-10-20

GenBank Submission: KX796965

> BO20803.complete
GAAGTTATCAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGA
TCAGTCCGCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAG
CAGGATCCTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCA
GCTACAGCAAAGCTTCTGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAA
TTGAAAATAATAACAATAATCATATTCATCATGGCGAGACAACGTATCAC
ATGAAAATACTGGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGG
TGGCGAGACGATCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGA
TGTCCAAGTCGCACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCTG
ATCACCGGCTCCACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGGA
CAAGATCCGCGAGAAGCCCGACCTGACCAACAAGATCGTCGATACCGACT
CAAAACAGACACAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAAC
TCGACCGCCGGCATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGAT
CAAGGAGGAGAGCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGATG
TGTCGTTGCAGGAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAAT
AAGAACGCCTGCAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGTC
GGGCACCTGCCTGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCCA
ACTTTAATCCGACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAAC
TCGAGCACCGCTTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTGC
AAACTCGGCGGCCAGCCTGCTAGTCAACGGCACCGGCATCAATTTGTCCA
TCAATCTGGGCTCACCCAATCCGGCGCCCAATCTAGCGGTTGCCACACAG
CTGCTCGAGCATATTAAGGTTGCCATGCGCGGCTCTGGCTATTCGGAGAC
CGTAACGAACGAAGTTGTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGCG
TCCTTGGAATGGGCGTGGGTGTGTCGCACACCAACGGCGCCCACTCAACG
CTGGGCAACTTCCTGGGCGTAACGACGCTGGACCAGCAGACAGCCGCTGC
CGCATCTGCGGCCACCGCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTAA
ATCTGGAGCAATATGCCGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCGG
CCGACGCAGTCGCAACTGGACGCTGCCGCAGTGCAATTCGATCCATTCCG
CCATTTGGGCTCGGCAACGGCGCCGGCCGCCACGCCCGTCTCACTGAACA
ACAATAGCTTTGGATTGACGGCGACCACGGGAACGGCGACCACGGCGCAG
CTGGGCGGTCTAAGCAAGAGTCCCACTCCCGGTGACCTTAGCTCCAAGGA
CTCGAAAAACGTCGAGGTGCCGGAAGTGATTATCGGCGCTATCCTAGGTG
CGCGTCCATATTATTATCCATACGCAAGCTTTCTAGACCAT

BO20803.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
ps-RI 1560 CG42670-PI 1..1557 17..1573 7785 100 Plus
ps-RD 1752 CG42670-PD 1..1533 17..1549 7665 100 Plus
ps-RB 1428 CG42670-PB 20..1425 168..1573 7030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
ps-RI 4635 CG8144-RI 133..1690 16..1573 7790 100 Plus
ps-RD 2685 CG8144-RD 133..1666 16..1549 7670 100 Plus
ps-RB 4508 CG8144-RB 158..1563 168..1573 7030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9445252..9445898 375..1021 3235 100 Plus
3R 32079331 3R 9445967..9446523 1017..1573 2785 100 Plus
3R 32079331 3R 9436967..9437120 16..169 770 100 Plus
3R 32079331 3R 9445043..9445188 233..378 730 100 Plus
3R 32079331 3R 9444011..9444077 168..234 335 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:27:07 has no hits.

BO20803.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:54 Download gff for BO20803.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RI 139..1690 22..1575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:58 Download gff for BO20803.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RI 139..1690 22..1575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:20 Download gff for BO20803.complete
Subject Subject Range Query Range Percent Splice Strand
ps-RI 139..1690 22..1575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:20 Download gff for BO20803.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9436973..9437118 22..167 100 -> Plus
3R 9444011..9444076 168..233 100 -> Plus
3R 9445044..9445187 234..377 100 -> Plus
3R 9445255..9445895 378..1018 100 -> Plus
3R 9445969..9446523 1019..1575 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:58 Download gff for BO20803.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5262695..5262840 22..167 100 -> Plus
arm_3R 5269733..5269798 168..233 100 -> Plus
arm_3R 5270766..5270909 234..377 100 -> Plus
arm_3R 5270977..5271617 378..1018 100 -> Plus
arm_3R 5271691..5272245 1019..1575 99   Plus

BO20803.pep Sequence

Translation from 16 to 1591

> BO20803.pep
MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF
CESVCSGIEVEIENNNNNHIHHGETTYHMKILVPAVASGAIIGKGGETIA
SLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIREK
PDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAFIKQIKEESG
SYVQISQKPTDVSLQERCITIIGDKENNKNACKMILSKIVEDPQSGTCLN
VSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGANSAAS
LLVNGTGINLSINLGSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEV
VAALSVLAKYGVLGMGVGVSHTNGAHSTLGNFLGVTTLDQQTAAAASAAT
ASNVFGAVGQVNLEQYAAAVASAAAASRPTQSQLDAAAVQFDPFRHLGSA
TAPAATPVSLNNNSFGLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVE
VPEVIIGAILGARPYYYPYASFLDH

BO20803.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
ps-PI 519 CG16765-PI 1..519 1..519 2623 100 Plus
ps-PD 583 CG8144-PD 1..511 1..511 2572 100 Plus
ps-PC 561 CG8144-PC 1..489 1..511 2416 95.7 Plus
ps-PB 475 CG8144-PB 8..475 52..519 2356 100 Plus
ps-PR 780 CG42670-PR 231..708 36..511 2307 97.1 Plus