BO20804.complete Sequence
1990 bp assembled on 2010-10-20
GenBank Submission: KX799941
> BO20804.complete
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATGCCTATAGGTATGGCTACGATGTCGGCA
AGACCGGCAACTTCCATCACGAGACCCGCGGTCCCGATGGAGTTACCTAC
GGCTGCTATGGCCTGATCGATCCCTACCACCTCCTCCGGGCAACACACTA
CGTGGCCGATGCCCACGGTTACCGCACCGTGGAGCCGGAGAAGCCAGTGG
AGACATTCCCGCCCCATCTGTACAGCGAGACCAACGGTGGTCCATCCGAG
CCTGGCATTGTGCTGCAGTGGGAGGAACTGTACTTCCCCATCGGATGTGG
AAAGTTTGCGAATGGTGCCCAGCACGGCGTCCCATTCTTCCTAGATGATT
TTAAGAACAAAGGCGGCAGCAACGATGCGATACCATCGTTCTCAGCCAAC
ACAATTGTGATCAAGGGCTCCGACCAGAAGAGTCTGCCCATCCACAAGCC
CACTGGTCCACTGGTGCCGCAGGGCACGGGGATCTTTGGCACGGACAAGG
GTCATTCGGATCTCAGCCATCCCGGCGATCAGGCGCCGTCCTTCCATTCG
GTGAACACCCTGCTACCGGGCAGCAACAATGATGGCCAGTACGTGCCGGA
TAGTAATCCCTATGTCCATGTGATTGGACCCAATGGCGGAAATGGAGGCA
ATGGAGGCAGCGGCTCTGGCGGCGGTTTCGGTGGAAACGGAGGATTTGGA
GGCGTTGGCGGTTTCGGACCCAATGGCCCGGGTGGCCCGAATGGACCAAA
GGGACCCAAGGGTCCTCCGGGACCACCGGGACCACCTGGCGGCCTGGGTC
CAGTCGGCGCGGGAGGAGGAGCCTCAGGAAAACCGGTCTACAAGGATGGC
GATCGCACTGGCCTGGGCGACGGTTCCGGAAACGGTTCCGGTGATCGCAT
CAGCACCGGAAACGGTGGCGGTGCCGGTGCCGGCGATCGTTATATCAGCG
GAAACGGAGGCGGCGTCGGTGCCGGCGACCGTTATGTCACCGGAAACGGT
GGCGGCGTCGGTGCTGGCGACCGTTACACCACCGGAAACGGTGGTGCCGC
CGGCTCTGGCGATCGTTATACCGCCGGAAACGGCGGTCGCTATAACACCG
GAAACGGTGGCGCTGTTGGTGGCGATCGTACGGGCACGGGTGCCGCCAGC
GGTTTCGGAATCGAAGCCAGTGGCCAGTATCGCCCGGATAATGAGGGAAC
CTACACGAGCACCTACACGCACACAGAGACCGGTTTTCCTGGGGCCATTC
CATACACTCCAGATAACGGCCCCACTGGACCACCGGCACCCCCATATGTC
CACGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGA
CGGCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCG
GCCCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCA
CCCGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACC
TTTCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTC
GTCCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACT
CGTCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGG
ACCACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTC
CACCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCT
CGTTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGC
CAAAGGTCCCGGCTATCACTATGCAAGCTTTCTAGACCAT
BO20804.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10625-RE | 1959 | CG10625-PE | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1..1403 | 17..1419 | 7015 | 100 | Plus |
| CG10625-RB | 2049 | CG10625-PB | 1..1403 | 17..1419 | 7015 | 100 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1492..2023 | 1418..1949 | 2660 | 100 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1041..1179 | 1099..1237 | 395 | 85.6 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1083..1221 | 1057..1195 | 395 | 85.6 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1041..1179 | 1099..1237 | 395 | 85.6 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1083..1221 | 1057..1195 | 395 | 85.6 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1704..1849 | 1753..1889 | 380 | 85.6 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1737..1873 | 1720..1865 | 380 | 85.6 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1794..1939 | 1753..1889 | 380 | 85.6 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1827..1963 | 1720..1865 | 380 | 85.6 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1122..1217 | 1054..1149 | 210 | 81.2 | Plus |
| CG10625-RE | 1959 | CG10625-PE | 1038..1133 | 1138..1233 | 210 | 81.2 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1038..1133 | 1138..1233 | 210 | 81.2 | Plus |
| CG10625-RH | 3543 | CG10625-PH | 1122..1217 | 1054..1149 | 210 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10625-RE | 3580 | CG10625-RE | 132..2087 | 17..1972 | 9780 | 100 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 353..1755 | 17..1419 | 7015 | 100 | Plus |
| CG10625-RB | 3441 | CG10625-RB | 124..1526 | 17..1419 | 7015 | 100 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 1844..2375 | 1418..1949 | 2660 | 100 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1172..1310 | 1099..1237 | 395 | 85.6 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1214..1352 | 1057..1195 | 395 | 85.6 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 1393..1531 | 1099..1237 | 395 | 85.6 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 1435..1573 | 1057..1195 | 395 | 85.6 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1835..1980 | 1753..1889 | 380 | 85.6 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1868..2004 | 1720..1865 | 380 | 85.6 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 2146..2291 | 1753..1889 | 380 | 85.6 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 2179..2315 | 1720..1865 | 380 | 85.6 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1169..1264 | 1138..1233 | 210 | 81.2 | Plus |
| CG10625-RE | 3580 | CG10625-RE | 1253..1348 | 1054..1149 | 210 | 81.2 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 1390..1485 | 1138..1233 | 210 | 81.2 | Plus |
| CG10625-RH | 4234 | CG10625-RH | 1474..1569 | 1054..1149 | 210 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5542491..5543174 | 1412..729 | 3420 | 100 | Minus |
| 3L | 28110227 | 3L | 5543619..5543947 | 499..171 | 1645 | 100 | Minus |
| 3L | 28110227 | 3L | 5540619..5540887 | 1881..1613 | 1345 | 100 | Minus |
| 3L | 28110227 | 3L | 5543233..5543465 | 732..500 | 1150 | 99.6 | Minus |
| 3L | 28110227 | 3L | 5541078..5541211 | 1551..1418 | 670 | 100 | Minus |
| 3L | 28110227 | 3L | 5544972..5545102 | 170..40 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 5542666..5542804 | 1195..1057 | 395 | 85.6 | Minus |
| 3L | 28110227 | 3L | 5542708..5542846 | 1237..1099 | 395 | 85.6 | Minus |
| 3L | 28110227 | 3L | 5540635..5540780 | 1889..1753 | 380 | 85.6 | Minus |
| 3L | 28110227 | 3L | 5540619..5540747 | 1857..1720 | 370 | 86.2 | Minus |
| 3L | 28110227 | 3L | 5540491..5540563 | 1949..1877 | 365 | 100 | Minus |
| 3L | 28110227 | 3L | 5542670..5542765 | 1149..1054 | 210 | 81.2 | Minus |
| 3L | 28110227 | 3L | 5542754..5542849 | 1233..1138 | 210 | 81.2 | Minus |
Blast to na_te.dros performed 2014-11-26 15:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader4 | 3105 | invader4 INVADER4 3105bp | 808..888 | 816..895 | 159 | 67.9 | Plus |
BO20804.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:50 Download gff for
BO20804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10625-RE | 345..2300 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:46 Download gff for
BO20804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10625-RE | 132..2087 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:58 Download gff for
BO20804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10625-RE | 132..2087 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:58 Download gff for
BO20804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5550784..5550807 | 17..40 | 100 | | Minus |
| 3L | 5540223..5540248 | 1950..1974 | 92 | <- | Minus |
| 3L | 5540491..5540559 | 1881..1949 | 100 | <- | Minus |
| 3L | 5540620..5540886 | 1614..1880 | 100 | <- | Minus |
| 3L | 5540952..5541014 | 1551..1613 | 100 | <- | Minus |
| 3L | 5541079..5541216 | 1413..1550 | 97 | <- | Minus |
| 3L | 5542491..5543174 | 729..1412 | 100 | <- | Minus |
| 3L | 5543237..5543465 | 500..728 | 100 | <- | Minus |
| 3L | 5543619..5543947 | 171..499 | 100 | <- | Minus |
| 3L | 5544972..5545101 | 41..170 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:46 Download gff for
BO20804.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5538072..5538201 | 41..170 | 100 | <- | Minus |
| arm_3L | 5543884..5543907 | 17..40 | 100 | | Minus |
| arm_3L | 5534179..5534316 | 1413..1550 | 97 | <- | Minus |
| arm_3L | 5536337..5536565 | 500..728 | 100 | <- | Minus |
| arm_3L | 5536719..5537047 | 171..499 | 100 | <- | Minus |
| arm_3L | 5533323..5533348 | 1950..1974 | 92 | <- | Minus |
| arm_3L | 5533591..5533659 | 1881..1949 | 100 | <- | Minus |
| arm_3L | 5533720..5533986 | 1614..1880 | 100 | <- | Minus |
| arm_3L | 5534052..5534114 | 1551..1613 | 100 | <- | Minus |
| arm_3L | 5535591..5536274 | 729..1412 | 100 | <- | Minus |
BO20804.pep Sequence
Translation from 16 to 1990
> BO20804.pep
MARAALCMAVACIFLQCVYSAKFDEQNRRLILDIDDQKTTNRQYYSSNID
TNAYRYGYDVGKTGNFHHETRGPDGVTYGCYGLIDPYHLLRATHYVADAH
GYRTVEPEKPVETFPPHLYSETNGGPSEPGIVLQWEELYFPIGCGKFANG
AQHGVPFFLDDFKNKGGSNDAIPSFSANTIVIKGSDQKSLPIHKPTGPLV
PQGTGIFGTDKGHSDLSHPGDQAPSFHSVNTLLPGSNNDGQYVPDSNPYV
HVIGPNGGNGGNGGSGSGGGFGGNGGFGGVGGFGPNGPGGPNGPKGPKGP
PGPPGPPGGLGPVGAGGGASGKPVYKDGDRTGLGDGSGNGSGDRISTGNG
GGAGAGDRYISGNGGGVGAGDRYVTGNGGGVGAGDRYTTGNGGAAGSGDR
YTAGNGGRYNTGNGGAVGGDRTGTGAASGFGIEASGQYRPDNEGTYTSTY
THTETGFPGAIPYTPDNGPTGPPAPPYVHVVGPEGGFGGNGGKGDGGGVG
PGGPGGPKGPGGPKGPNGPNGPPGPPGPPGPPGPPGPKGPTKPGPFGPPG
PPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPGPPGPTRPGPPGPPGPT
RPGPPGPTRPGPPGPTRPGPPGPSPNDPRYSDKETPGYLPPNQPAKGPGY
HYASFLDH
BO20804.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10625-PE | 652 | CG10625-PE | 1..652 | 1..652 | 3747 | 100 | Plus |
| CG10625-PB | 682 | CG10625-PB | 1..682 | 1..652 | 3706 | 95.6 | Plus |
| CG10625-PC | 682 | CG10625-PC | 1..682 | 1..652 | 3706 | 95.6 | Plus |
| CG10625-PH | 1180 | CG10625-PH | 1..676 | 1..646 | 3661 | 95.4 | Plus |
| CG10625-PD | 268 | CG10625-PD | 52..268 | 405..652 | 1169 | 81 | Plus |
