BO20810.complete Sequence
847 bp assembled on 2009-05-13
GenBank Submission: KX797249
> BO20810.complete
GAAGTTATCAGTCGACATGCAGCAACAGGATCAGCACCTGGACAAAAACA
AGCAGAAGCGCCACCGCACCCGCTTCACGCCCGCCCAGTTGAACGAGCTG
GAGCGCTGCTTCTCGAAGACGCACTATCCGGACATCTTCATGCGCGAGGA
GATCGCCATGCGGATTGGCCTCACTGAGTCCCGCGTTCAGGTCTGGTTCC
AGAACCGCCGTGCCAAGTGGAAGAAGCGCAAGAAGACAACCAATGTCTTC
CGCACCCCGGGCGCCCTGCTGCCCTCCCATGGACTTCCGCCGTTTGGGGC
CAATATAACCAATATCGCCATGGGCGATGGTCTCTGTGGCACGGGAATGT
TTGGCGGAGATCGCTGGAGCGTGGGTGTCAATCCAATGACGGCAGGCGAC
TCCATGATGTACCAGCACAGTGTGGGCGGAGTCAGTTGTGGGCCCAGTGG
TTCGCCGAGCGCCACCACCCCGCCGAACATGAACAGCTGCTCCTCGGTGA
CCCCGCCGCCACTTTCCGCGCAGCCGAACTCCAGCCAAAACGAGCTGAAC
GGCGAGCCCATGCCGCTGCACCAGCAGCAACAACAACAGACTCACCAACA
TCAGCAACAGCAAACTCACCAACACCACCCGATGGCGCCACCAACACCCA
CACAGCAACAGCAGCAGCTTCCGCAGTCTATGCAGTCGCCGTCAGATGGC
GCCAACGACACACTCCACAGCATCGCAGCGCTGCGGCGGCGGGCGTCCGA
ACTAAATGCGATTCCTTCCTACCTACAGATGGCGCCACACAACTACGAAC
ACTACAATTCGAATTCCAATTCGGTCTACGCAAGCTTTCTAGACCAT
BO20810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-RJ | 1125 | CG10036-PJ | 309..1122 | 16..829 | 4070 | 100 | Plus |
| otp-RC | 816 | CG10036-PC | 1..813 | 17..829 | 4065 | 100 | Plus |
| otp-RI | 1104 | CG10036-PI | 325..1101 | 53..829 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-RJ | 2856 | CG10036-RJ | 1173..1986 | 16..829 | 4070 | 100 | Plus |
| otp-RC | 2347 | CG10036-RC | 664..1477 | 16..829 | 4070 | 100 | Plus |
| otp-RI | 2835 | CG10036-RI | 1189..1965 | 53..829 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20884495..20884762 | 829..562 | 1340 | 100 | Minus |
| 2R | 25286936 | 2R | 20886522..20886730 | 396..188 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 20885202..20885372 | 562..392 | 855 | 100 | Minus |
| 2R | 25286936 | 2R | 20895709..20895869 | 192..32 | 805 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6878 | 570..724 | 244 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2484 | 548..729 | 240 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2511 | 548..737 | 235 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6913 | 521..691 | 230 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6858 | 538..675 | 229 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6934 | 520..687 | 224 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6835 | 563..676 | 209 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2535 | 563..729 | 206 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..3026 | 476..691 | 192 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 579..668 | 191 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 581..668 | 189 | 73 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1164 | 554..669 | 187 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2511 | 520..668 | 183 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6814 | 580..676 | 178 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6992 | 520..724 | 178 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2889 | 553..724 | 175 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2902 | 531..722 | 173 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2709..2979 | 475..729 | 171 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2534 | 532..631 | 166 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1165 | 512..622 | 159 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1612 | 516..629 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2539 | 566..652 | 153 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2977 | 521..675 | 152 | 58.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8018 | 550..626 | 148 | 67.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..577 | 561..627 | 148 | 71.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9462 | 550..626 | 148 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1151 | 543..629 | 146 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2665 | 597..666 | 142 | 70.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3342 | 532..642 | 141 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 575..654 | 138 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6923 | 518..611 | 136 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1600 | 572..628 | 127 | 72.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..195 | 566..612 | 127 | 74.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9225 | 566..612 | 127 | 74.5 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2066 | 572..629 | 121 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6570 | 587..630 | 114 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2685 | 568..620 | 112 | 67.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3288..3336 | 563..611 | 110 | 69.4 | Plus |
BO20810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:36 Download gff for
BO20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 664..1476 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:21 Download gff for
BO20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 665..1477 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:01 Download gff for
BO20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RC | 665..1477 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:01 Download gff for
BO20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20886523..20886727 | 191..395 | 100 | <- | Minus |
| 2R | 20884492..20884761 | 563..831 | 99 | <- | Minus |
| 2R | 20885202..20885368 | 396..562 | 100 | <- | Minus |
| 2R | 20895711..20895866 | 35..190 | 100 | <- | Minus |
| 2R | 20896475..20896492 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:21 Download gff for
BO20810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16771997..16772266 | 563..831 | 99 | <- | Minus |
| arm_2R | 16772707..16772873 | 396..562 | 100 | <- | Minus |
| arm_2R | 16774028..16774232 | 191..395 | 100 | <- | Minus |
| arm_2R | 16783216..16783371 | 35..190 | 100 | <- | Minus |
| arm_2R | 16783980..16783997 | 17..34 | 100 | | Minus |
BO20810.pep Sequence
Translation from 16 to 847
> BO20810.pep
MQQQDQHLDKNKQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRI
GLTESRVQVWFQNRRAKWKKRKKTTNVFRTPGALLPSHGLPPFGANITNI
AMGDGLCGTGMFGGDRWSVGVNPMTAGDSMMYQHSVGGVSCGPSGSPSAT
TPPNMNSCSSVTPPPLSAQPNSSQNELNGEPMPLHQQQQQQTHQHQQQQT
HQHHPMAPPTPTQQQQQLPQSMQSPSDGANDTLHSIAALRRRASELNAIP
SYLQMAPHNYEHYNSNSNSVYASFLDH
BO20810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-PC | 271 | CG10036-PC | 1..271 | 1..271 | 1471 | 100 | Plus |
| otp-PJ | 374 | CG10036-PJ | 104..374 | 1..271 | 1471 | 100 | Plus |
| otp-PF | 313 | CG10036-PF | 1..313 | 1..271 | 1418 | 86.6 | Plus |
| otp-PG | 264 | CG10036-PG | 1..264 | 1..271 | 1414 | 97.4 | Plus |
| otp-PI | 367 | CG10036-PI | 104..367 | 1..271 | 1414 | 97.4 | Plus |
