BO20818.complete Sequence
1807 bp assembled on 2010-10-20
GenBank Submission: KX800062
> BO20818.complete
GAAGTTATCAGTCGACATGGAAATTTTGCGAACGAAACTAGAGGCCTGCC
TGCTGATACTGAACAGGAACAATGCAGCAGCTGCAAACTGGCTGAATGAC
CTGTGCGCCGTGCTATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTG
CTCCCAGGGGCAGTCGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCC
AGATTATGATCTGCATTCGCCAAGTGGAGAACACCATGAAACTAGAATGC
GGCACCACAGTCTCGGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTG
GTGCCTGAAGCGCCTCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAG
CAGTAGCTCCGGAGCGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGAT
TGTTTGGCGCAGTTCACCTCGCACAGTGAGGAAAACACCGATACCTCCAA
CTGTCCAAAGACTCCCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCG
CCAACATTGATTTGATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCT
TTGTCTCAGGACAAGAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCG
GGAGTGCAATGCCTTTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACT
ACCTGTCCACCCTTAAGCTGCGGGCCATGACCATGGAACAGGCAATTTAC
CAATTGGAGGACTTTATCAACGATGCGCTTTTGCGCTTGGTATTCACATG
CTTCCTGGACTTCGAGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAA
GGAACAGCCCAGATAATGATGATCTGGCCGATGAGTTCATAGCGGACTTT
GATGTGAACATAGATCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTT
TGCGCCCAACTTGAAAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCT
TTGAATCACTGGACACCACTCTGATACCTTCACTGCAGGCCCATGGTTCC
GATTTGCACTCGGACATCCTAGAGCAGCACTTTAACGAGGAGGTGGCCAA
GTTCAAGGCAGCGCTTCAGGAGATCATCGACAGCCGCGCCCTCGTTGGTT
GTTGCCTGGAGATACTGACCTCAGGGATAAGTGCAACGGAAAAGCTTTTC
GATAAGCAGCGATTGGAGGACTTGGTTCAAATCTCTTTGCTGCTAGTCGA
GCACTTTCAGCTGGAAGTCAACCGAAAGGGTCTAAGCGAAACGCAGGACC
GATTGGGGGAAGAGTACTACCAGCAGTTCATCCGGGTACTGCGCGAGTGC
AAGGCTATTTTGATGTGCGCATCCCAGGTGGAGCCGCAGAGAATCCTCAA
GCGCTTCAAGATCTTGCGCACGATCTTGCGCAAATTGCACGGCTCCCTGG
GAGCTGGTAAACAAGAGGAGGAACTTCCTATTCCCCTGGCTCCCCTTTTA
GCTGATGATACCAAGGGGGTAAATGAAGACGAAACCCATTTCACTGGCTA
TAAAACAGCCCGAAGCGGCAGTATCCTCTACGACACAGAACGTAGGAATA
GAGTAACTAGACGAACGGACAACAAGCTACCCACAAATACCTTGGACATT
AAATCGGATAAGGCAAAACCCCATGGAAATGTTCTGAGAAGAGAAAGTTT
ACGGACTGTCATGTTCAAGCGGCAGAATATAGCTGAAAGCAGAAAGCTAT
ACACCTCCATGAGTAATCAGTCTACGGATCTACAAATCACAGATATACTC
GACCAACTCACTGGAATGTCCAATGGATACTTTGAATGCGCAAGCTTTCT
AGACCAT
BO20818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-RB | 1776 | CG8247-PB | 1..1773 | 17..1789 | 8850 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-RB | 2119 | CG8247-RB | 107..1879 | 17..1789 | 8850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8920784..8921507 | 1641..918 | 3605 | 99.9 | Minus |
| 2R | 25286936 | 2R | 8921951..8922280 | 594..265 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 8921572..8921898 | 917..591 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 8922333..8922506 | 271..98 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8920620..8920721 | 1742..1641 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 8922568..8922649 | 98..17 | 410 | 100 | Minus |
| 2R | 25286936 | 2R | 8920510..8920558 | 1789..1741 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 2892..2946 | 34..88 | 113 | 67.3 | Plus |
BO20818.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:52 Download gff for
BO20818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8247-RB | 103..1875 | 17..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:54 Download gff for
BO20818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8247-RB | 107..1879 | 17..1791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:12 Download gff for
BO20818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-RB | 107..1879 | 17..1791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:12 Download gff for
BO20818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8920507..8920556 | 1743..1791 | 96 | <- | Minus |
| 2R | 8920620..8920721 | 1641..1742 | 100 | <- | Minus |
| 2R | 8920785..8921507 | 918..1640 | 99 | <- | Minus |
| 2R | 8921572..8921896 | 593..917 | 100 | <- | Minus |
| 2R | 8921953..8922279 | 266..592 | 100 | <- | Minus |
| 2R | 8922339..8922506 | 98..265 | 100 | <- | Minus |
| 2R | 8922569..8922649 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:54 Download gff for
BO20818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4808012..4808061 | 1743..1791 | 96 | <- | Minus |
| arm_2R | 4808125..4808226 | 1641..1742 | 100 | <- | Minus |
| arm_2R | 4808290..4809012 | 918..1640 | 99 | <- | Minus |
| arm_2R | 4809077..4809401 | 593..917 | 100 | <- | Minus |
| arm_2R | 4809458..4809784 | 266..592 | 100 | <- | Minus |
| arm_2R | 4809844..4810011 | 98..265 | 100 | <- | Minus |
| arm_2R | 4810074..4810154 | 17..97 | 100 | | Minus |
BO20818.pep Sequence
Translation from 16 to 1807
> BO20818.pep
MEILRTKLEACLLILNRNNAAAANWLNDLCAVLLEFATLAHSSFCSQGQS
ECSELVCLCLSQIMICIRQVENTMKLECGTTVSVSHQYFLDRIRWCLKRL
MHLYSEESSSEAVAPERSFLKLVDGALDCLAQFTSHSEENTDTSNCPKTP
KEVLPLSQKLRANIDLILGQSLGFANVALSQDKRALSALCQKVIRECNAF
QEECKESFSANYLSTLKLRAMTMEQAIYQLEDFINDALLRLVFTCFLDFE
KFSVDKIRALLRNSPDNDDLADEFIADFDVNIDRATQIGIFAISFAPNLK
MKTIMRSCLASFESLDTTLIPSLQAHGSDLHSDILEQHFNEEVAKFKAAL
QEIIDSRALVGCCLEILTSGISATEKLFDKQRLEDLVQISLLLVEHFQLE
VNRKGLSETQDRLGEEYYQQFIRVLRECKAILMCASQVEPQRILKRFKIL
RTILRKLHGSLGAGKQEEELPIPLAPLLADDTKGVNEDETHFTGYKTARS
GSILYDTERRNRVTRRTDNKLPTNTLDIKSDKAKPHGNVLRRESLRTVMF
KRQNIAESRKLYTSMSNQSTDLQITDILDQLTGMSNGYFECASFLDH
BO20818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-PB | 591 | CG8247-PB | 1..591 | 1..591 | 3006 | 100 | Plus |
| Sry-alpha-PB | 530 | CG17957-PB | 1..449 | 1..457 | 715 | 36.6 | Plus |
| Sry-alpha-PA | 530 | CG17957-PA | 1..449 | 1..457 | 715 | 36.6 | Plus |
