BO20821.complete Sequence
1129 bp assembled on 2009-05-13
GenBank Submission: KX795908
> BO20821.complete
GAAGTTATCAGTCGACATGAGCCGACTCCTGGAGAAGCCCAACATCGCCA
TGTCCATCAAGTCCACGGGTAGTCAGCTCTCGAGCACGATGACGACAGCC
TCGGCGACGCTGTCCTCGGACCTGGACGATGCGGACACATCCCGCACCCA
GCTGAGTCCATCGGAAACATCTGGAGTAGTCCTCGTACCCGCCACTACAG
TCACACCCATGCGCCAGAAAATCGACCAGGTGGTGATCAGCCTGATATCC
GGAGCAGCGGCGGGGGCGCTGGCCAAGACGGTCATCGCCCCGCTGGACCG
CACAAAGATCAACTTCCAGATCCGCAACGATGTGCCCTTCTCGTTTCGAG
CCTCGCTGCGCTACCTGCAAAACACCTATGCCAACGAGGGCGTTTTGGCC
CTGTGGCGGGGGAACTCGGCCACGATGGCCAGAATCGTGCCCTACGCAGC
CATACAGTTCACGGCCCACGAGCAGTGGCGTCGCATCCTGCACGTCGACA
AGGACGGCACCAACACGAAAGGTCGTCGGTTTTTGGCTGGCTCCCTGGCG
GGAATCACCTCACAGTCGCTGACGTATCCTCTGGACCTGGCACGCGCCCG
CATGGCCGTCACGGATCGGTATACTGGCTATCGGACGCTGCGACAAGTCT
TCACCAAGATCTGGGTGGAGGAGGGTCCGCGGACGCTGTTCCGCGGCTAC
TGGGCGACCGTTCTCGGCGTGATTCCCTATGCGGGCACCTCCTTCTTCAC
CTACGAGACTCTTAAGCGGGAATACTATGAAGTGGTCGGCAACAATAAAC
CCAATACTCTAGTCTCGCTGGCCTTCGGTGCTGCGGCTGGTGCCGCCGGG
CAAACGGCCAGCTATCCATTGGACATTGTGCGGCGAAGAATGCAGACAAT
GCGGGTGAACACGGCTGGCGGAGATCGGTACCCAACCATCCTGGAGACTC
TCGTCAAGATCTATCGTGAGGAGGGCGTCAAGAACGGTTTCTACAAGGGA
CTTAGCATGAACTGGATCAAGGGACCCATCGCCGTGGGCATCAGCTTCTC
CACCTACGATCTGATCAAGGCGTGGCTCACGGAGCTGGCCAACTTGAGAC
GGGTTGAGAAAGCAAGCTTTCTAGACCAT
BO20821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RF | 1098 | CG4241-PF | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| att-ORFA-RC | 1098 | CG4241-PC | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| att-ORFA-RA | 1098 | CG4241-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-RF | 2089 | CG4241-RF | 474..1568 | 17..1111 | 5475 | 100 | Plus |
| att-ORFA-RC | 1898 | CG4241-RC | 283..1377 | 17..1111 | 5475 | 100 | Plus |
| att-ORFA-RA | 1654 | CG4241-RA | 283..1377 | 17..1111 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20553896..20554199 | 513..210 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 20553570..20553835 | 779..514 | 1330 | 100 | Minus |
| 3R | 32079331 | 3R | 20554706..20554898 | 209..17 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 20553127..20553314 | 966..779 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 20552912..20553057 | 1111..966 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:45 has no hits.
BO20821.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:35 Download gff for
BO20821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RC | 297..1391 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:53 Download gff for
BO20821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RA | 283..1377 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:54 Download gff for
BO20821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| att-ORFA-RA | 283..1377 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:54 Download gff for
BO20821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20552908..20553056 | 967..1113 | 98 | <- | Minus |
| 3R | 20553127..20553313 | 780..966 | 100 | <- | Minus |
| 3R | 20553570..20553835 | 514..779 | 100 | <- | Minus |
| 3R | 20553896..20554199 | 210..513 | 100 | <- | Minus |
| 3R | 20554706..20554898 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:53 Download gff for
BO20821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16378849..16379035 | 780..966 | 100 | <- | Minus |
| arm_3R | 16379292..16379557 | 514..779 | 100 | <- | Minus |
| arm_3R | 16378630..16378778 | 967..1113 | 98 | <- | Minus |
| arm_3R | 16379618..16379921 | 210..513 | 100 | <- | Minus |
| arm_3R | 16380428..16380620 | 17..209 | 100 | | Minus |
BO20821.pep Sequence
Translation from 16 to 1129
> BO20821.pep
MSRLLEKPNIAMSIKSTGSQLSSTMTTASATLSSDLDDADTSRTQLSPSE
TSGVVLVPATTVTPMRQKIDQVVISLISGAAAGALAKTVIAPLDRTKINF
QIRNDVPFSFRASLRYLQNTYANEGVLALWRGNSATMARIVPYAAIQFTA
HEQWRRILHVDKDGTNTKGRRFLAGSLAGITSQSLTYPLDLARARMAVTD
RYTGYRTLRQVFTKIWVEEGPRTLFRGYWATVLGVIPYAGTSFFTYETLK
REYYEVVGNNKPNTLVSLAFGAAAGAAGQTASYPLDIVRRRMQTMRVNTA
GGDRYPTILETLVKIYREEGVKNGFYKGLSMNWIKGPIAVGISFSTYDLI
KAWLTELANLRRVEKASFLDH
BO20821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| att-ORFA-PF | 365 | CG4241-PF | 1..365 | 1..365 | 1849 | 100 | Plus |
| att-ORFA-PC | 365 | CG4241-PC | 1..365 | 1..365 | 1849 | 100 | Plus |
| att-ORFA-PA | 365 | CG4241-PA | 1..365 | 1..365 | 1849 | 100 | Plus |
| att-ORFA-PD | 364 | CG4241-PD | 1..364 | 1..365 | 1832 | 99.7 | Plus |
| att-ORFA-PE | 290 | CG4241-PE | 1..290 | 76..365 | 1492 | 99.7 | Plus |
