BO20822.complete Sequence
1171 bp assembled on 2009-05-13
GenBank Submission: KX795957
> BO20822.complete
GAAGTTATCAGTCGACATGCTGTTGATGCCCACATCCTGTGGGCCGGGTC
CACCCAACGACCACGGCCCCATGTCCTTGCCCACTTCCTCCCCCTCCTGC
TCCAAACGCGCCCGCATACCCACGCGAGCGGCAGATGATGATGAGCCGTT
GCGGCGGTCAGGGACCCTAACCCAAAGGCAAAGTTCGGGGTCGGGCATTC
CCCAATGGCTGCTAATCCTCATCGGACTCCTCGCCATTCTCGCCCAGACA
CCAGGCAGCCAGGTGGCCGCCGAGAAGAGTAAACACTATTACATGCAGTC
GCTGTGCAAGAACCACTTCCTCCAGCAGCTGTACCGAAAGATCGATGGAG
CGGTGCTCTGGTCACAGAACGAGCGGAATCTGGACTGCATTATCACCTTC
CAGACGCACTCGGTGCTGCAGCGCTTCATGCTCCGCTTCGACATGCTGCA
GTTGGACTGCAACGATCACCTGCTGGTTTACGATGGCGCCCACGCCGTCG
CCACGCCCAAGATTGACATCTCCTGTCGGAACACAAAGAACACCGTCAAC
GCGCTCCTGACGCGCACGAACTTTGTGACACTGAAGTACGTGACCGATGG
CTGGGGAACGGATGCGAACGGCTTCAAGCTGGTGATTACGTCGGTGAAGG
ATCCCAAGCACACCTGCAAGGACTTCACCTGCGCCACCCGCGAGTTCTGC
ATCCATCCCGATCTCCTCTGCGATGGCATCAACCACTGCGGCGACAACTC
CGACGAATCCGTGCAGAATCTGTGCCAGAATGAGACGAGCAGCACGGTTT
TTGGCCTGGACATGACCTGGTTCGTCCTCATTGTCGTCGGTGTGCTGCTC
GTCCTGAGCGCGCTCATCGTGGCAGTGGCCATTTGTGTGTGCCGGCGACA
GGATGAGAATGCCGCCAACCAGAACACCGCGCTCCAAGTGCACCATACGG
CCGACACGAACGGGTCGTCGAAACATCTGCACTACCACGGCATCAGTGTC
GGCGGGACACTGACGCGGGAGCACACCCAACTGCCGACGTCGGGAAACTG
GCATCACCCTGCGGGACCATCCGGGTACCACCGCACTCCACACAACTACT
TGAAGATGGCCACCAAAGTCCGTCCCATTTGGTGCTTGGCAAATTCCGTC
AATGCAAGCTTTCTAGACCAT
BO20822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6024-RF | 1140 | CG6024-PF | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| CG6024-RC | 1140 | CG6024-PC | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6024-RF | 4932 | CG6024-RF | 408..1544 | 17..1153 | 5685 | 100 | Plus |
| CG6024-RC | 3123 | CG6024-RC | 546..1682 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11759626..11759896 | 287..17 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 11743806..11744029 | 511..288 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 11737069..11737285 | 1153..937 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 11737349..11737507 | 938..780 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 11737785..11737931 | 656..510 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 11737581..11737708 | 784..657 | 625 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:14:08 has no hits.
BO20822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:34 Download gff for
BO20822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 546..1682 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:31 Download gff for
BO20822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 546..1682 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:20 Download gff for
BO20822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6024-RC | 546..1682 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:20 Download gff for
BO20822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11759626..11759896 | 17..287 | 100 | | Minus |
| 3L | 11743806..11744029 | 288..511 | 100 | <- | Minus |
| 3L | 11737586..11737708 | 657..779 | 100 | <- | Minus |
| 3L | 11737785..11737929 | 512..656 | 100 | <- | Minus |
| 3L | 11737067..11737283 | 939..1155 | 99 | <- | Minus |
| 3L | 11737349..11737507 | 780..938 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:31 Download gff for
BO20822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11730686..11730808 | 657..779 | 100 | <- | Minus |
| arm_3L | 11730885..11731029 | 512..656 | 100 | <- | Minus |
| arm_3L | 11736906..11737129 | 288..511 | 100 | <- | Minus |
| arm_3L | 11752726..11752996 | 17..287 | 100 | | Minus |
| arm_3L | 11730167..11730383 | 939..1155 | 99 | <- | Minus |
| arm_3L | 11730449..11730607 | 780..938 | 100 | <- | Minus |
BO20822.pep Sequence
Translation from 16 to 1171
> BO20822.pep
MLLMPTSCGPGPPNDHGPMSLPTSSPSCSKRARIPTRAADDDEPLRRSGT
LTQRQSSGSGIPQWLLILIGLLAILAQTPGSQVAAEKSKHYYMQSLCKNH
FLQQLYRKIDGAVLWSQNERNLDCIITFQTHSVLQRFMLRFDMLQLDCND
HLLVYDGAHAVATPKIDISCRNTKNTVNALLTRTNFVTLKYVTDGWGTDA
NGFKLVITSVKDPKHTCKDFTCATREFCIHPDLLCDGINHCGDNSDESVQ
NLCQNETSSTVFGLDMTWFVLIVVGVLLVLSALIVAVAICVCRRQDENAA
NQNTALQVHHTADTNGSSKHLHYHGISVGGTLTREHTQLPTSGNWHHPAG
PSGYHRTPHNYLKMATKVRPIWCLANSVNASFLDH
BO20822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6024-PF | 379 | CG6024-PF | 1..379 | 1..379 | 2045 | 100 | Plus |
| CG6024-PC | 379 | CG6024-PC | 1..379 | 1..379 | 2045 | 100 | Plus |
