BO20827.complete Sequence
976 bp assembled on 2009-05-13
GenBank Submission: KX794450
> BO20827.complete
GAAGTTATCAGTCGACATGAATCTGTTAGACTTGCCACAAACACTAATTC
AGGACATTTTGGAGTTGCTCCCCTACGACGAGGTGGCAAAAAAACGAGAG
GTGTGCACTCTATTTAATTATCTTGGGCAGCAAATATTAAACAAGGGTTT
TAACAAGATCATTATGGCCCATGCCAAGAACTTCAAGCGCATCAAATCCA
TGCTGCCACGACGGGAATCGGAACGCAGGAACCACATTCTATCCCGCCAC
TCGGACATACTTACCTCGATCGAAACACGGATCTCGATGCTGACCATGAC
GTACTCCAAGTTTATTGACCTCAACATCTGCTGTTTCATACCTGGTCGCG
TTCTGGACGAGATCAACAGCATCCTGCGCATTTTGAGCACCTCCACTAAA
CAGCTGCGACCACATGAAGTGCTGCAGGAGCTGCGCGACATCTCCTCCAT
GGCCATTGAGCATTTCGACGAAAAGATTGCTGTGAATTTCAAATTGGAAC
ACCGAAAACAATTGGCGGAATCCACGGCGGCCGGAGCTCGACTTGTGGTT
TGCAGTGCCTTGGGCGACATAAGCTTTAGTGGCGTAAGGCGAACCGGAAT
CAGTCGTCCCGTAGATCATGGGCTCGTCCAGCAGGCTATCGTTCAGTTGG
CCCCCATATCTGCCAGCAAATCACACTCTGATTCCTCTCAAAAGGATCGC
ATGTCTAAACAACTGTTCAAGCAATACCAGCTCCAAAGGTCACTTTCGCA
AAAGATTCGCCTCTTGGAAGTGTCGCGCAAGGTGCAGGATCGCCGATTGC
AGGAAGCCCTATCCAGCATCACCGAACTGACCACCCAAGTGTCCGAACTT
AAGCGCCAAATGGAGGATGTGGTGGCCAATATGCCCAGTTGCGCTGTTAA
ACGTCAGGCTGTCGCCAGCGCGGACTGCTTACCACCGGCCCTGAAAAAAC
CCAAGGTGGCAAGCTTTCTAGACCAT
BO20827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 945 | CG3428-PA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-RA | 1206 | CG3428-RA | 87..1028 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9486626..9487358 | 958..226 | 3665 | 100 | Minus |
| 3L | 28110227 | 3L | 9487424..9487554 | 229..99 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 9487618..9487704 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:04 has no hits.
BO20827.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:33 Download gff for
BO20827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 64..1005 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:54 Download gff for
BO20827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 87..1028 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:52 Download gff for
BO20827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pall-RA | 87..1028 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:52 Download gff for
BO20827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9487425..9487552 | 101..228 | 100 | <- | Minus |
| 3L | 9487621..9487704 | 17..100 | 100 | | Minus |
| 3L | 9486622..9487355 | 229..960 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:54 Download gff for
BO20827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9480525..9480652 | 101..228 | 100 | <- | Minus |
| arm_3L | 9480721..9480804 | 17..100 | 100 | | Minus |
| arm_3L | 9479722..9480455 | 229..960 | 99 | <- | Minus |
BO20827.pep Sequence
Translation from 16 to 976
> BO20827.pep
MNLLDLPQTLIQDILELLPYDEVAKKREVCTLFNYLGQQILNKGFNKIIM
AHAKNFKRIKSMLPRRESERRNHILSRHSDILTSIETRISMLTMTYSKFI
DLNICCFIPGRVLDEINSILRILSTSTKQLRPHEVLQELRDISSMAIEHF
DEKIAVNFKLEHRKQLAESTAAGARLVVCSALGDISFSGVRRTGISRPVD
HGLVQQAIVQLAPISASKSHSDSSQKDRMSKQLFKQYQLQRSLSQKIRLL
EVSRKVQDRRLQEALSSITELTTQVSELKRQMEDVVANMPSCAVKRQAVA
SADCLPPALKKPKVASFLDH
BO20827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pall-PA | 314 | CG3428-PA | 1..314 | 1..314 | 1556 | 100 | Plus |
| dmpd-PB | 603 | CG11866-PB | 121..382 | 2..284 | 305 | 30.2 | Plus |
| dmpd-PA | 603 | CG11866-PA | 121..382 | 2..284 | 305 | 30.2 | Plus |
