BO20829.complete Sequence
2248 bp assembled on 2010-10-20
GenBank Submission: KX794146
> BO20829.complete
GAAGTTATCAGTCGACATGCCTGACCACACGAGAGTTACCGCAACGACAA
GGAGTAGGCCATGGCTATGTGGAGCCATCCCAGTGCTGCTGCTCCTCCTG
CTGACTCTCGTAATCCTGCCTCCGGAAACCACCGCCTTCTGCCCCTCGAA
GTGCCAGTGTTTGGGCGGCGAGGCAAATAGTAGAGCGTTGTGCGTGGACG
CCGCTCTGGAGGATGTGCCTATCCAACTTAATCCGGAAACGAAATACATT
AACCTTACAGTAAATCGGATTCGTACGCTAGAATTCTCGCTGCCATTCTA
CATGAAGCTTGAGATCCTGGATCTCTCGCAGAATATCATCGAAACGCTGG
GCTCGAAAAACTTCGAGTACCAATCGGAACTGAGAACCCTGAATCTGAGC
CGGAATTTGGTCAGTTCCCTGCACAAACATGCCTTCAAGGGTCTGACCAA
TCTGTTGCTTCTTGATCTCAGTTTCAATCGCATTGAGACAGTGCATCCCA
CCGCTCTAAGTGATCTCGCCTCCCTGGTGGAGCTGGATCTTACGAATAAC
AATATTGTCAGCTTGGAGGACAACTGCTTCAAGGGCATGAACACCCTAGA
GGTTCTCGTGTTCCGGAATAATCGATTGCTAGACGTTCCAGCCAGTAATC
TTTGGCATTTGCATGCCCTCAAGAGCCTGGATATGTCCTTGAATCTGGTC
GAGTTTGTGCGGAATGACAGTTTCGAGGGCTTAAAGGAGCTTTTGGCCCT
CAGCGTGCAGGGCAATGTGATGAGCGAACTGGATTTGAGTGCCTTCGAGG
GACTTATATCCTTGAAACATCTGGATCTGTCCGATAATAATCTCACGATG
GTGCCTACACAGCAGCTCTCGAAACTCTCGAACCTCACCTATTTGAACCT
GGGCGGCAATCGCTTTTCCCAGCTGCCTGCCGTCGCCTTCCTGAACCTGT
TTCATTTGCGCGAATTGCATTTGAGCCGGCTGGACTTCTTGCAGCGCATC
GATTCGAGAGCCTTTGTGGACAACACGCACCTACAAACGCTCCACCTGAA
CAACAATCCCCAGCTGAGCGACATACCGATGCGCCTGTTCCAGGGAAACC
CCAACATTCTTGAGGTCTACATGCAGAGCAACAGCCTGCAGACCTTGTAC
TCGGCTCAGTTCCCGGTGGATCAGCTGCAGAAGCTCTACCTCGGGGACAA
CCCGCTGCAGTGCAACTGCTCGTTGCTGTGGCTCTGGCGATTGGTAACCG
GCAACTTCGAGGGAGTCGATCCGGGCATGGAGCACGCAGCCGGTGGTGCT
GTGGCTGCTCTGGCCAAGGAAGCCGACGACGAGGAACTGGCGGATGAGGC
AACCGCTGTGGCATCCACGGACGACGGAGTGGCCGCTTTGGCTGCCTACA
TAGCCGAGCAGCATATAGTGAATGCCCTGCACACCACTGAACCCAGTGCC
TATGAGCTGGCCACGTCCTCCTCGAACAGAAACTCCGGTATCCTGCGAAT
GGATCGACAGCAGATCGGCTGCGACATCTGGCGGGATAAGGTGCGTACGA
GGAGGAAGCTCTTGACCATGAGCGAGGGCGAGATCACCTGTCCCGCCCAC
ATTGTTACTGTGGTGTGTGCGGTGATCACATGCCTGCTGGTGGCCATGAT
TGGAATCAGCGTGCTGTACTACCTGCGCTTTGTCAAGCGGCGGAGGAAAT
TGCTCCACGAACGGGGTCCCATGCGGACCAGCAAGAGCATCATCAACGTT
CACGATCGCATCCTGCAGGGTCACAATCCCGGTGGCCTCGGCCTGGGCAT
GAGCATGACCCTGGGTGGCGGTAATCATGTTAATGGATTGGGCATGACCC
TCAATTATCCGCATCATGCACAAACCCTGCAGGCCCACCATCACTACCAT
CAGGCCATGCCACTGCAGTCCCATGGGGGCAATGGTAACCACGAGTACCA
GCAGACGACTCTGCCACAACTGGACAAACTGGAACTGGAGCGCTACCTGG
CGGCCCAGACCATAGCCAATGAATACCGGGCCCTGAAGCCCTGGGAACTG
CCCGTCAAGGAGGCGGATGATGAACCGGAGCATCTTTACGAGCGGTTCGA
TCACTACGAGTATCCGGACACTCACACCATGAGCAAGCTGAAGCAGGCTG
CGTCCTTGAACCACTCCAACTCCTCGGCAGGTCCTTCGCCCGTTCCACCC
TCATCGGGAAAACCGCATGTGGTCTACGTAGCAAGCTTTCTAGACCAT
BO20829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fili-RD | 2217 | CG34368-PD | 1..2214 | 17..2230 | 11040 | 99.9 | Plus |
| Fili-RC | 2217 | CG34368-PC | 1..2214 | 17..2230 | 11040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fili-RD | 4584 | CG34368-RD | 585..2798 | 17..2230 | 11040 | 99.9 | Plus |
| Fili-RC | 4859 | CG34368-RC | 860..3073 | 17..2230 | 11040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21943246..21944473 | 1003..2230 | 6095 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21929520..21930350 | 17..847 | 4155 | 100 | Plus |
| 2R | 25286936 | 2R | 21934431..21934592 | 847..1008 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:59 has no hits.
BO20829.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:47 Download gff for
BO20829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fili-RC | 858..3071 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:40 Download gff for
BO20829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fili-RC | 860..3073 | 17..2232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:42 Download gff for
BO20829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fili-RC | 860..3073 | 17..2232 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:42 Download gff for
BO20829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21929520..21930350 | 17..847 | 100 | -> | Plus |
| 2R | 21934432..21934592 | 848..1008 | 100 | -> | Plus |
| 2R | 21943252..21944473 | 1009..2232 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:40 Download gff for
BO20829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17817025..17817855 | 17..847 | 100 | -> | Plus |
| arm_2R | 17821937..17822097 | 848..1008 | 100 | -> | Plus |
| arm_2R | 17830757..17831978 | 1009..2232 | 99 | | Plus |
BO20829.pep Sequence
Translation from 16 to 2248
> BO20829.pep
MPDHTRVTATTRSRPWLCGAIPVLLLLLLTLVILPPETTAFCPSKCQCLG
GEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRTLEFSLPFYMKLEI
LDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLD
LSFNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFR
NNRLLDVPASNLWHLHALKSLDMSLNLVEFVRNDSFEGLKELLALSVQGN
VMSELDLSAFEGLISLKHLDLSDNNLTMVPTQQLSKLSNLTYLNLGGNRF
SQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNNNPQL
SDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCN
CSLLWLWRLVTGNFEGVDPGMEHAAGGAVAALAKEADDEELADEATAVAS
TDDGVAALAAYIAEQHIVNALHTTEPSAYELATSSSNRNSGILRMDRQQI
GCDIWRDKVRTRRKLLTMSEGEITCPAHIVTVVCAVITCLLVAMIGISVL
YYLRFVKRRRKLLHERGPMRTSKSIINVHDRILQGHNPGGLGLGMSMTLG
GGNHVNGLGMTLNYPHHAQTLQAHHHYHQAMPLQSHGGNGNHEYQQTTLP
QLDKLELERYLAAQTIANEYRALKPWELPVKEADDEPEHLYERFDHYEYP
DTHTMSKLKQAASLNHSNSSAGPSPVPPSSGKPHVVYVASFLDH
BO20829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fili-PD | 738 | CG34368-PD | 1..738 | 1..738 | 3831 | 100 | Plus |
| Fili-PC | 738 | CG34368-PC | 1..738 | 1..738 | 3831 | 100 | Plus |
| caps-PD | 780 | CG11282-PD | 4..410 | 6..410 | 558 | 33.3 | Plus |
| caps-PB | 540 | CG11282-PB | 4..410 | 6..410 | 558 | 33.3 | Plus |
| caps-PA | 540 | CG11282-PA | 4..410 | 6..410 | 558 | 33.3 | Plus |
