BO20831.complete Sequence
379 bp assembled on 2009-05-13
> BO20831.complete
GAAGTTATCAGTCGACATGATAATGCTAATGACTCCGATGACGATGCAGA
AATGGAGAATGACAAATCAGTACAACCCCAGGATGAATACAATTCATAGT
TGCGGTTGTATGGGCGTGCGCACCTGCTTGAGCTGCGAACAGGACTTTCA
GGTAGCAAAGAGCTGCCTCGGCGAATCAGTGCTCTCTTTGATGCCCTACG
AAGTTCAACAACCGGGCAAGTACAACTTGGACTTGGTGGCCAGCTACGAA
GATGAACTATTGGCGCCTCTACTGACAGATGACCAATTTGCAACTTTTGA
GGAAATGGTGCTGCGCATACCTTTGCCAAACCTCTGCCTAATAGTTTTGT
ATGGACCAGGGGCAAGCTTTCTAGACCAT
BO20831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 915 | CG4036-PB | 558..754 | 163..359 | 790 | 93.4 | Plus |
| CG4036-RA | 915 | CG4036-PA | 558..754 | 163..359 | 790 | 93.4 | Plus |
| CG4036-RB | 915 | CG4036-PB | 1..79 | 83..161 | 275 | 89.9 | Plus |
| CG4036-RA | 915 | CG4036-PA | 1..79 | 83..161 | 275 | 89.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 579..775 | 163..359 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 631..827 | 163..359 | 790 | 93.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 70..152 | 79..161 | 295 | 90.4 | Plus |
| CG4036-RB | 950 | CG4036-RB | 20..100 | 81..161 | 285 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9789367..9789617 | 330..80 | 1255 | 100 | Minus |
| 2L | 23513712 | 2L | 9791527..9791694 | 163..330 | 705 | 94.6 | Plus |
| 2L | 23513712 | 2L | 9790966..9791048 | 79..161 | 295 | 90.4 | Plus |
| 2L | 23513712 | 2L | 9789790..9789838 | 82..34 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:57:33 has no hits.
BO20831.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:32 Download gff for
BO20831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18854-RC | 487..509 | 17..39 | 100 | -> | Plus |
| CG18854-RC | 608..929 | 40..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:55 Download gff for
BO20831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 164..359 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:34 Download gff for
BO20831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 632..827 | 164..359 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:34 Download gff for
BO20831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9789273..9789306 | 331..363 | 94 | <- | Minus |
| 2L | 9789367..9789615 | 82..330 | 100 | <- | Minus |
| 2L | 9789791..9789832 | 40..81 | 100 | <- | Minus |
| 2L | 9789931..9789953 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:55 Download gff for
BO20831.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9789273..9789306 | 331..363 | 94 | <- | Minus |
| arm_2L | 9789367..9789615 | 82..330 | 100 | <- | Minus |
| arm_2L | 9789791..9789832 | 40..81 | 100 | <- | Minus |
| arm_2L | 9789931..9789953 | 17..39 | 100 | | Minus |
BO20831.pep Sequence
Translation from 16 to 379
> BO20831.pep
MIMLMTPMTMQKWRMTNQYNPRMNTIHSCGCMGVRTCLSCEQDFQVAKSC
LGESVLSLMPYEVQQPGKYNLDLVASYEDELLAPLLTDDQFATFEEMVLR
IPLPNLCLIVLYGPGASFLDH
BO20831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-PB | 304 | CG4036-PB | 183..258 | 46..121 | 293 | 76.3 | Plus |
| CG4036-PA | 304 | CG4036-PA | 183..258 | 46..121 | 293 | 76.3 | Plus |
