BO20833.complete Sequence
3028 bp assembled on 2010-10-20
GenBank Submission: KX797187
> BO20833.complete
GAAGTTATCAGTCGACATGTTCCGGAGTCGCAGCTGGTTTGGCGGACCCT
GGGGTGGGCGGCCCAAAAACCGCTTGTCGCTGGAGCACCTTAAGTACCTG
TACAGCATTCTGGAGAAGAACACCACCGTGTCGGAAAGTAATCGTGGCCT
GCTGGTGGAGTCGCTGCGCTGCATCGCAGAGATCCTGATTTGGGGCGACC
AGCATGACTCGCTGGTGTTTGACTTCTTCTTGGAGAAGAATATGCTATCG
TATTTCCTGCACATAATGCGACAAAAGAGTGGAGGCTCGAGTTTCGTCTG
CGTGCAGCTCCTTCAGACTCTCAACATCCTCTTTGAGAACATACGCAACG
AGACGTCCCTGTATTATCTGTTGAGCAACAACCATGTAAATTCTATCATG
GTGCACAAGTTTGACTTCTCCGACGAGGATGTGATGGGCTATTATATACT
TTTTTTAAAGACGCTAAGTCTAAAGTTAAACACTCACACAATACACTTCT
TTTACAATGAGCACACAAATGACTTTCCCTTGTATACGGAGGCTATTAAG
TTCTTTAATCATCCCGAGTCAATGGTGAGAATTGCAGTGCGCACCATTTC
CTTAAATGTCTACAAGGTTCAAAATCCAAGCATGTTGCGTTTTATTCGAG
ACAAAACGGCTGCTCCATATTTCAGTAATCTGGTCTGGTTTATCGGCAAA
CACATTCTTGAACTAGACACTTGTGTTCGCACAGATATAGACCATCAATC
GAATCAAAAGCTGTCCAATTTGGTTGCCGAGCATCTGGATCATTTGCATT
ATTTGAGTGACATTCTTCTACTGGAAATCAAGGATCTGAACGCGGTGTTA
ACCGAGCACTTGCTGCATAAGCTATTCGTGCCTCTGTACATATTCTCACT
TACACCAGCTCCGCCCCCGCCCTCACTGGCAGTGGTTACCCAGAATCTAG
CTGCTGTGCTTAATCGCAATGTGGACATCGACATACAGGAGATGCACAAT
CCGCGAGTGAGCTCCATCGTGGCCCTTTTCCTGCTCTCATTGGTCTTCCT
GGTGGTTTCGCATGCCCCTCTGGTGCACGCTCTGGCCTGGGTTATCCTCA
ATGGTGACCACAGCGTTTTTAAGGAGGGTGCAGCCGAGATTCTTAATTCA
TACGTTGAGCACCGCGAGGTGGTTGTGCCTGGCTTCGGCGAGCCCGACGA
GAGTCTCGAACAGGCCTTGGATACAGTCACCGGTCAGTCCAGCTCGTCCA
GCTATGCCCTTAGCGAGGACAGTGGCGTGGAGTCCTCATCCCCAGCCACC
ACAGAACTGGACTCTCAAGCAGATGCGGTTGAAGCGGAGCAGATTAAACT
GCGCAACATAACTGACGAGGAAAAGCAGCTGCTGCAGAAGTCATCTTCCT
CAACGAAGGCTGACTTTGCTGAGATGGCCAAACCGTTTTTAGACACGGTC
CTGCATGCTTTGGACTGCACCGAAAACGATTACCTTGCCCTGCTGTCGCT
GTGCCTCATATATGCTATGTCGCACAATAGAGGCATCAAGAATGAGTGGT
TCGAGCAGGTTCTTGCAAAATCAACCCGTGGCGCCTTCAGTTATAAGACA
GCCTTGATTGAGCATCTGTTAAACATCATCACCCAGTCCAGTCAGCCATC
GTCCCGCATTCGGTTGATTACCGTGGAGATTGCCTTGGAGTTACTGGTCA
CTTTCACCCGTCCCAGCTCGGATGATTCGCGCTGCATAACCGCCGCACAA
CAGGATCTGCTCTTCAGCGCCCGCAATCAGTCGATGGTGGTGATCCGTAA
CTTCTACAAGTCGGAGGACATCTTCCTAGACCTGTTCGAAGACGAATACA
ACGAGATGCGAAAGGCGCAACTGAACGTGGAATTCCTGTGCATGGACTCC
ACCATTCTACTGCCTCCCACGGGAACGCCACTTACTGGAATCAACTTTAC
GCGACGACTTCCCTGCGGGGAGGTGGAAAAGGCACGCCGAGCCATTCGCG
TTTACTTCCTGCTGCGTCGCACGTGCCAAAAGTTTTTGAATGAGAAGGAA
TCGCTATTGCCGCTTACAAATGTAGTCAATCTGGTTCAGGTGGAGAACGT
ACTCGATCTGAACAATAGTGATCTAATAGCCTGCACCGTTGTGGCCAAGG
ACAGCAGCAAGCAAAGACGCTTTCTGGTCATTGACGCATTGCAGCTAATT
CTCGTCGAGCCGGATGCAAAGCTGCTTGGCTGGGGCGTGGCAAAGTTCGT
TGGCTTTCTGCAGGACGTAGAGGTGCAGGGTGATAAGGATGACTCGCGCT
GCTTGCACATCACCGTGCACCGGGGCGGAGTCACTCACAACCGCACTCCG
TTGCTCTCGGCTAAGTTCCTGTTCGACGATCACATCCGTTGCATGGCTGC
CAAGCAGAGGTTGACAAAGGGTCGTAGCAAGGCGCGACAAAAGAAGATGT
ACCAGATTGCGCAACTCATCGAGATTCCTGGACAGATGGACTCTCCCGTC
TACGCTGTTGGTGGCACAATGGTCGCATCCAGTAGCGGCGGAAGTGGTAA
CAGCAGTGGCAGCAGTTCGCGCAGTAGTCACCACCGTCCCATGTTCTCCA
CGGCCAATCGAGTGCCGGGATTTGCAGCGGTGCTGCGTGGAAGCAATAGC
GCTGGGGTTAGTCGAACCCAGATGGCCCCGAATCGATCCATCGAAGGGTC
GGAGGAGATTCCTCTCGAGGACTTCCAGCACTCACGGAACAACAGTCCGC
ACTCTCGGGGAAACCCCTCGCCTGCCTCCCGCTCACACACACCCATCCGC
GTGCTCCACTACGATCAGCTGTCCGGTCATAGCGGCTCACCACGTGAAGC
GTCCCTGGGGGGAACTAACGCCCTGCTAAGCCAGTTAAATGGGCTGAACC
GTGAAGTGCTCCCAACGCAGAGCTCCGAGGAGACTTCTTTTATTGGGAGC
GACGGAAACGAGGCCACTGGCGGATCGGAGGGCAGGCGACGGGGGGCCAT
AGAGACGGTTGCAAGCTTTCTAGACCAT
BO20833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ema-RB | 2997 | CG12753-PB | 1..2994 | 17..3010 | 14955 | 100 | Plus |
| ema-RA | 3204 | CG12753-PA | 1..2681 | 17..2697 | 13390 | 100 | Plus |
| ema-RC | 3087 | CG12753-PC | 1..1516 | 17..1532 | 7565 | 99.9 | Plus |
| ema-RA | 3204 | CG12753-PA | 2888..3201 | 2697..3010 | 1570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ema-RB | 3383 | CG12753-RB | 242..3237 | 15..3010 | 14965 | 100 | Plus |
| ema-RA | 3590 | CG12753-RA | 242..2924 | 15..2697 | 13400 | 100 | Plus |
| ema-RC | 3473 | CG12753-RC | 242..1759 | 15..1532 | 7575 | 99.9 | Plus |
| ema-RA | 3590 | CG12753-RA | 3131..3444 | 2697..3010 | 1570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16439612..16440403 | 1533..742 | 3960 | 100 | Minus |
| 3R | 32079331 | 3R | 16438063..16438650 | 2699..2112 | 2940 | 100 | Minus |
| 3R | 32079331 | 3R | 16438712..16439173 | 2111..1650 | 2310 | 100 | Minus |
| 3R | 32079331 | 3R | 16437026..16437339 | 3010..2697 | 1570 | 100 | Minus |
| 3R | 32079331 | 3R | 16441213..16441420 | 222..15 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 16440808..16440956 | 511..363 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 16440608..16440752 | 654..510 | 710 | 99.3 | Minus |
| 3R | 32079331 | 3R | 16441020..16441159 | 362..223 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 16439241..16439363 | 1649..1527 | 600 | 99.2 | Minus |
| 3R | 32079331 | 3R | 16440465..16440551 | 741..655 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:26:10 has no hits.
BO20833.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:51 Download gff for
BO20833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12753-RB | 248..3236 | 22..3012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:49 Download gff for
BO20833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ema-RB | 249..3237 | 22..3012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:01 Download gff for
BO20833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ema-RB | 249..3237 | 22..3012 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:01 Download gff for
BO20833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16441020..16441159 | 223..362 | 100 | <- | Minus |
| 3R | 16440465..16440551 | 655..741 | 100 | <- | Minus |
| 3R | 16440608..16440750 | 512..654 | 99 | <- | Minus |
| 3R | 16440808..16440956 | 363..511 | 100 | <- | Minus |
| 3R | 16437024..16437338 | 2698..3012 | 99 | <- | Minus |
| 3R | 16438065..16438650 | 2112..2697 | 100 | <- | Minus |
| 3R | 16438712..16439173 | 1650..2111 | 100 | <- | Minus |
| 3R | 16439241..16439357 | 1533..1649 | 100 | <- | Minus |
| 3R | 16439613..16440403 | 742..1532 | 100 | <- | Minus |
| 3R | 16441213..16441413 | 22..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:49 Download gff for
BO20833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12266187..12266273 | 655..741 | 100 | <- | Minus |
| arm_3R | 12266330..12266472 | 512..654 | 99 | <- | Minus |
| arm_3R | 12266530..12266678 | 363..511 | 100 | <- | Minus |
| arm_3R | 12266742..12266881 | 223..362 | 100 | <- | Minus |
| arm_3R | 12262746..12263060 | 2698..3012 | 99 | <- | Minus |
| arm_3R | 12263787..12264372 | 2112..2697 | 100 | <- | Minus |
| arm_3R | 12264434..12264895 | 1650..2111 | 100 | <- | Minus |
| arm_3R | 12264963..12265079 | 1533..1649 | 100 | <- | Minus |
| arm_3R | 12265335..12266125 | 742..1532 | 100 | <- | Minus |
| arm_3R | 12266935..12267135 | 22..222 | 100 | | Minus |
BO20833.pep Sequence
Translation from 16 to 3028
> BO20833.pep
MFRSRSWFGGPWGGRPKNRLSLEHLKYLYSILEKNTTVSESNRGLLVESL
RCIAEILIWGDQHDSLVFDFFLEKNMLSYFLHIMRQKSGGSSFVCVQLLQ
TLNILFENIRNETSLYYLLSNNHVNSIMVHKFDFSDEDVMGYYILFLKTL
SLKLNTHTIHFFYNEHTNDFPLYTEAIKFFNHPESMVRIAVRTISLNVYK
VQNPSMLRFIRDKTAAPYFSNLVWFIGKHILELDTCVRTDIDHQSNQKLS
NLVAEHLDHLHYLSDILLLEIKDLNAVLTEHLLHKLFVPLYIFSLTPAPP
PPSLAVVTQNLAAVLNRNVDIDIQEMHNPRVSSIVALFLLSLVFLVVSHA
PLVHALAWVILNGDHSVFKEGAAEILNSYVEHREVVVPGFGEPDESLEQA
LDTVTGQSSSSSYALSEDSGVESSSPATTELDSQADAVEAEQIKLRNITD
EEKQLLQKSSSSTKADFAEMAKPFLDTVLHALDCTENDYLALLSLCLIYA
MSHNRGIKNEWFEQVLAKSTRGAFSYKTALIEHLLNIITQSSQPSSRIRL
ITVEIALELLVTFTRPSSDDSRCITAAQQDLLFSARNQSMVVIRNFYKSE
DIFLDLFEDEYNEMRKAQLNVEFLCMDSTILLPPTGTPLTGINFTRRLPC
GEVEKARRAIRVYFLLRRTCQKFLNEKESLLPLTNVVNLVQVENVLDLNN
SDLIACTVVAKDSSKQRRFLVIDALQLILVEPDAKLLGWGVAKFVGFLQD
VEVQGDKDDSRCLHITVHRGGVTHNRTPLLSAKFLFDDHIRCMAAKQRLT
KGRSKARQKKMYQIAQLIEIPGQMDSPVYAVGGTMVASSSGGSGNSSGSS
SRSSHHRPMFSTANRVPGFAAVLRGSNSAGVSRTQMAPNRSIEGSEEIPL
EDFQHSRNNSPHSRGNPSPASRSHTPIRVLHYDQLSGHSGSPREASLGGT
NALLSQLNGLNREVLPTQSSEETSFIGSDGNEATGGSEGRRRGAIETVAS
FLDH
BO20833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ema-PB | 998 | CG12753-PB | 1..998 | 1..998 | 5100 | 100 | Plus |
| ema-PA | 1067 | CG12753-PA | 1..1067 | 1..998 | 4870 | 91.8 | Plus |
| ema-PC | 1028 | CG12753-PC | 1..1028 | 1..998 | 4619 | 88.1 | Plus |
