BO20835.complete Sequence
1174 bp assembled on 2009-05-13
GenBank Submission: KX797069
> BO20835.complete
GAAGTTATCAGTCGACATGGCCACAACCTGCATGCCGCATTTCACGGAAT
ATTTTCAAACCACCACCCAGTCAGAGTTAACAACAAATGAAAGTGCCAAC
AGCAGAAGCAGCAGCAGCAGCAGTGGCTGTAGAGAACCGTCCAAAACCAG
TGGCTTCTTCTACAGCGCCAGCACACATTACCAGAGCAAAGTGCAGCAGC
TAATCAGCTTCAGCTTCACCTCATCGTTCCACCTGCTCTTCATCACCTGC
ATACTGAGCATCAGCAAATTCTGCAATGCGGCGGCGGTAAATGCCGCCCA
TGTGACCGCTGCCACGCCCACTGCCAGCGAGATAATGCACAATCTGAGCG
GATCGGCGCTGCTAGAGCGTCTGAAAGCCAGTACTCTGGGACCCACCCTC
GATCAGCTGAAGCATCTGGCTCCTGCGGCAGCCAACAGCATTAGTCCTGG
TACAGGATCTGGCATGGGAATCGGGATGGGACACTTTGGCAGTTCCATTA
ATTCGGTGCTAAACGGAAATCCTTTAAAGTTCTTGAATGTGTCAGGAAAA
ATCGGCACTCCTTTGGACATATCTCTCGGTCTGAGCAACTACTGCGATGA
GAAGCAGTTCCAGTGCTCCACCGGCGAATGTATCCCCATACGGTTCGTGT
GCGATGGCTCCTCGGATTGCCCGGACCACAGTGATGAGCGGCTGGAGGAG
TGCAAGTTTACAGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAA
CGGAAAGTGCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCG
CCGATGGAAGCGATGAATCGACGTCCCAGTGCCTTGAAACAAAAACTGGA
AACAACCGCACAGACACATCTAACCAGGTCCACAAATCTGATGCCGAATC
AGAAAATGATTACGTCGAAATAGCCTTGCATGTGATTGCCAGTTTAGCGG
GCACAGCTTTAGTAGCAAGCGTCATCTATGTCGTATACCGACGCTGCACG
CGCGCCGTGAACTCGATGAACTTCGAGAATCCCGTCTACCACAAGACCAC
AGAGGACCACTTCAGTCTGGAGAAGAATGGGACGCCACACATTTACGCCG
CAGCCAATGACGAGGAGGCCGTCAACCCCCTCTTCAAATCTGGCACCGAA
TGTGTTGCAAGCTTTCTAGACCAT
BO20835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RD | 1143 | CG31092-PD | 1..1140 | 17..1156 | 5700 | 100 | Plus |
| LpR2-RG | 3192 | CG31092-PG | 1..817 | 17..833 | 4085 | 100 | Plus |
| LpR2-RE | 3195 | CG31092-PE | 1..817 | 17..833 | 4085 | 100 | Plus |
| LpR2-RG | 3192 | CG31092-PG | 2867..3189 | 834..1156 | 1615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RD | 2634 | CG31092-RD | 234..1373 | 17..1156 | 5700 | 100 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 234..1050 | 17..833 | 4085 | 100 | Plus |
| LpR2-RE | 4189 | CG31092-RE | 234..1050 | 17..833 | 4085 | 100 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 3100..3422 | 834..1156 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25739055..25739610 | 572..17 | 2780 | 100 | Minus |
| 3R | 32079331 | 3R | 25701308..25701455 | 1118..971 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 25722416..25722556 | 713..573 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 25701523..25701661 | 972..834 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 25713842..25713964 | 833..711 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 25754348..25754465 | 710..593 | 245 | 80.5 | Minus |
| 3R | 32079331 | 3R | 25699988..25700028 | 1156..1116 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:13:24 has no hits.
BO20835.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:31 Download gff for
BO20835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1373 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:59 Download gff for
BO20835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1373 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:17 Download gff for
BO20835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RD | 234..1373 | 17..1158 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:17 Download gff for
BO20835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25713842..25713961 | 714..833 | 100 | <- | Minus |
| 3R | 25722416..25722556 | 573..713 | 100 | <- | Minus |
| 3R | 25699986..25700026 | 1118..1158 | 95 | <- | Minus |
| 3R | 25701309..25701455 | 971..1117 | 100 | <- | Minus |
| 3R | 25701525..25701661 | 834..970 | 100 | <- | Minus |
| 3R | 25739055..25739610 | 17..572 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:59 Download gff for
BO20835.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21539564..21539683 | 714..833 | 100 | <- | Minus |
| arm_3R | 21548138..21548278 | 573..713 | 100 | <- | Minus |
| arm_3R | 21525708..21525748 | 1118..1158 | 95 | <- | Minus |
| arm_3R | 21527031..21527177 | 971..1117 | 100 | <- | Minus |
| arm_3R | 21527247..21527383 | 834..970 | 100 | <- | Minus |
| arm_3R | 21564777..21565332 | 17..572 | 100 | | Minus |
BO20835.pep Sequence
Translation from 16 to 1174
> BO20835.pep
MATTCMPHFTEYFQTTTQSELTTNESANSRSSSSSSGCREPSKTSGFFYS
ASTHYQSKVQQLISFSFTSSFHLLFITCILSISKFCNAAAVNAAHVTAAT
PTASEIMHNLSGSALLERLKASTLGPTLDQLKHLAPAAANSISPGTGSGM
GIGMGHFGSSINSVLNGNPLKFLNVSGKIGTPLDISLGLSNYCDEKQFQC
STGECIPIRFVCDGSSDCPDHSDERLEECKFTESTCSQEQFRCGNGKCIP
RRWVCDRENDCADGSDESTSQCLETKTGNNRTDTSNQVHKSDAESENDYV
EIALHVIASLAGTALVASVIYVVYRRCTRAVNSMNFENPVYHKTTEDHFS
LEKNGTPHIYAAANDEEAVNPLFKSGTECVASFLDH
BO20835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-PD | 380 | CG31092-PD | 1..380 | 1..380 | 2004 | 100 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 1..272 | 1..272 | 1443 | 100 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 1..272 | 1..272 | 1443 | 100 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 1..272 | 1..272 | 1443 | 100 | Plus |
| LpR2-PE | 1064 | CG31092-PE | 1..272 | 1..272 | 1443 | 100 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 921..1028 | 273..380 | 561 | 100 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 922..1029 | 273..380 | 561 | 100 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 949..1063 | 263..380 | 559 | 93.2 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 356..451 | 193..287 | 190 | 38.1 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 357..452 | 193..287 | 190 | 38.1 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 356..451 | 193..287 | 190 | 38.1 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 316..387 | 193..267 | 184 | 44 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 317..388 | 193..267 | 184 | 44 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 316..387 | 193..267 | 184 | 44 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 441..521 | 193..272 | 183 | 42 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 442..522 | 193..272 | 183 | 42 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 441..521 | 193..272 | 183 | 42 | Plus |
| LpR2-PA | 1028 | CG31092-PA | 392..472 | 186..267 | 182 | 41 | Plus |
| LpR2-PC | 1029 | CG31092-PC | 393..473 | 186..267 | 182 | 41 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 392..472 | 186..267 | 182 | 41 | Plus |
