BO20836.complete Sequence
1972 bp assembled on 2010-10-20
GenBank Submission: KX796866
> BO20836.complete
GAAGTTATCAGTCGACATGAAATATCCATTTGTGAACGTTCGCCTGCCGC
CCGAGGAAACCGTTGAGGTGGCCGCACCGATCTTCGAGGAGGGCATGGAA
GTGGAGGTGTTCACGCGCACGAACGATCGGGAAACCTGCGGCTGGTGGGT
GGGCATTATTAAAATGCGCAAAGCGGAAATCTATGCGGTCGCGTACATCG
GTTTTGAGACGTCCTACACCGAAATCTGTGAATTGGGTCGTCTGCGCGCC
AAAAACTCGAATCCGCCAATTACAGCCAAGACCTTCTACCAGTTCACGCT
GCCCGTGCCCGAGGAGTTGCGCGAAGAAGCCCAGAAGGATGGTATACACA
AGGAGTTTCAGCGCACAATCGATGCCGGCGTGTGCAACTACAGTCGCGAT
CTGGACGCCCTGATTGTCATCTCCAAGTTTGAGCACACTCAGAAGCGAGC
CAGTATGCTCAAGGATATGCATTTTCGTAATCTCTCACAAAAGGTTATGC
TGTTGAAAAGGACTGAAGAAGCTGCCCGTCAGCTCGAAACAACTAAACTG
ATGAGCCGTGGAAACTACGTTGAGGAGTTCCGTGTGCGTGACGATCTCAT
GGGTTTGGCGATTGGCTCGCATGGCTCGAATATTCAAGCGGCACGCACTG
TGGACGGCGTCACCAACATCGAGCTGGAGGAGAAGTCCTGCACATTCAAA
ATCAGCGGAGAGACCGAGGAGTCTGTGCAGCGTGCCCGCGCGATGCTCGA
ATACGCCGAGGAGTTCTTCCAGGTGCCCAGGGAGTTGGTGGGCAAGGTGA
TTGGCAAGAATGGGCGCATTATCCAGGAGATTGTGGACAAGAGTGGCGTG
TTTCGAATCAAGGTGAGTGCTATCGCTGGCGACGATGAACAGGATCAGAA
CATACCACGTGAGCTGGCGCATGTACCCTTTGTGTTCATTGGCACCGTGG
AGAGCATTGCAAATGCCAAAGTGCTGTTGGAGTATCATCTGTCGCACCTG
AAGGAAGTAGAACAGTTGCGTCAGGAGAAGATGGAGATTGATCAGCAGCT
TCGCGCCATCCAGGAATCCTCCATGGGCTCCACACAGAGCTTCCCAGTGA
CGCGGCGCTCTGAGCGCGGCTACAGCAGTGACATTGAGTCGGTGCGCTCT
ATGCGCGGCGGTGGTGGCGGCCAGCGTGGTCGTGTACGCGGACGTGGTGG
TGGCGGTCCTGGAGGTGGCAATGGCCTGAACCAGCGCTACCACAACAATC
GCCGCGACGAGGATGACTACAACTCGCGGGGCGATCATCAGCGTGACCAG
CAGCGTGGCTACAACGATCGCGGCGGTGGTGACAACACTGGCAGCTATCG
TGGAGGCGGTGGTGGCGCCGGTGGTCCTGGCAACAACAGGCGCGGCGGAA
TCAACCGCCGGCCGCCACGCAACGATCAGCAGAATGGCAGGGACTATCAG
CACCACAACCACACCACCGAAGAGGTGCGGGAGACCCGTGAAATGAGCAG
CGTGGAGAGAGCGGACAGTAACTCATCGTACGAAGGTAGCTCGCGGAGGC
GCAGAAGGCAGAAGAACAACAATGGACCCAGTAACACAAACGGAGCTGTT
GCCAATAACAACAACAAACCTCAGTCGGCGCAGCAGCCACAACAGCAGCA
GCCGCCGGCGCCTGGGAATAAGGCGGCACTAAATGCCGGAGATGCCAGCA
AACAGAACAGCGGCAATGCGAACGCCGCTGGCGGTGCGAGCAAGCCGAAG
GATGCCTCACGCAACGGCGACAAGCAGCAGGCGGGCACACAGCAGCAACA
GCCATCGCAGGTACAACAGCAACAGGCGGCACAGCAGCAGCAGCCGAAAC
CGCGACGCAACAAGAATCGCAGCAACAACCACACGGACCAGCCATCCGGA
CAGCAGCAGCTGGCGGAGAATGTCAAAAAGGAGGGCCTGGTCAATGGCAC
GTCCGCAAGCTTTCTAGACCAT
BO20836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 1941 | CG6203-PF | 1..1938 | 17..1954 | 9675 | 99.9 | Plus |
| Fmr1-RA | 2055 | CG6203-PA | 115..2052 | 17..1954 | 9675 | 99.9 | Plus |
| Fmr1-RG | 2190 | CG6203-PG | 259..2187 | 17..1954 | 9505 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-RF | 3773 | CG6203-RF | 177..2114 | 17..1954 | 9675 | 99.9 | Plus |
| Fmr1-RA | 3381 | CG6203-RA | 683..2620 | 17..1954 | 9675 | 99.9 | Plus |
| Fmr1-RG | 4426 | CG6203-RG | 683..2611 | 17..1954 | 9505 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10104289..10104798 | 1511..1002 | 2550 | 100 | Minus |
| 3R | 32079331 | 3R | 10103235..10103602 | 1954..1587 | 1825 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10105060..10105370 | 871..561 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105790..10106100 | 327..17 | 1555 | 100 | Minus |
| 3R | 32079331 | 3R | 10105557..10105724 | 495..328 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 10104878..10105010 | 1004..872 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 10103673..10103749 | 1586..1510 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 10105434..10105505 | 561..490 | 360 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6856 | 1773..1912 | 232 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7010 | 1603..1891 | 218 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7035 | 1552..1839 | 215 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6929 | 1699..1916 | 210 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..7070 | 1565..1922 | 176 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2418 | 1784..1910 | 173 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2642 | 1579..1912 | 172 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2527 | 1599..1824 | 171 | 56.3 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4490..4624 | 1591..1726 | 119 | 55.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1145 | 1617..1661 | 117 | 73.3 | Plus |
BO20836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 18:18:39 Download gff for
BO20836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 683..2620 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:22 Download gff for
BO20836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 683..2620 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:28 Download gff for
BO20836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmr1-RA | 683..2620 | 17..1956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:28 Download gff for
BO20836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10103233..10103602 | 1587..1956 | 99 | <- | Minus |
| 3R | 10103673..10103747 | 1512..1586 | 100 | <- | Minus |
| 3R | 10104289..10104796 | 1004..1511 | 100 | <- | Minus |
| 3R | 10104879..10105010 | 872..1003 | 100 | <- | Minus |
| 3R | 10105060..10105369 | 562..871 | 100 | <- | Minus |
| 3R | 10105434..10105501 | 494..561 | 100 | <- | Minus |
| 3R | 10105559..10105724 | 328..493 | 100 | <- | Minus |
| 3R | 10105790..10106100 | 17..327 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:22 Download gff for
BO20836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5930601..5930732 | 872..1003 | 100 | <- | Minus |
| arm_3R | 5928955..5929324 | 1587..1956 | 99 | <- | Minus |
| arm_3R | 5929395..5929469 | 1512..1586 | 100 | <- | Minus |
| arm_3R | 5930011..5930518 | 1004..1511 | 100 | <- | Minus |
| arm_3R | 5930782..5931091 | 562..871 | 100 | <- | Minus |
| arm_3R | 5931156..5931223 | 494..561 | 100 | <- | Minus |
| arm_3R | 5931281..5931446 | 328..493 | 100 | <- | Minus |
| arm_3R | 5931512..5931822 | 17..327 | 100 | | Minus |
BO20836.pep Sequence
Translation from 16 to 1972
> BO20836.pep
MKYPFVNVRLPPEETVEVAAPIFEEGMEVEVFTRTNDRETCGWWVGIIKM
RKAEIYAVAYIGFETSYTEICELGRLRAKNSNPPITAKTFYQFTLPVPEE
LREEAQKDGIHKEFQRTIDAGVCNYSRDLDALIVISKFEHTQKRASMLKD
MHFRNLSQKVMLLKRTEEAARQLETTKLMSRGNYVEEFRVRDDLMGLAIG
SHGSNIQAARTVDGVTNIELEEKSCTFKISGETEESVQRARAMLEYAEEF
FQVPRELVGKVIGKNGRIIQEIVDKSGVFRIKVSAIAGDDEQDQNIPREL
AHVPFVFIGTVESIANAKVLLEYHLSHLKEVEQLRQEKMEIDQQLRAIQE
SSMGSTQSFPVTRRSERGYSSDIESVRSMRGGGGGQRGRVRGRGGGGPGG
GNGLNQRYHNNRRDEDDYNSRGDHQRDQQRGYNDRGGGDNTGSYRGGGGG
AGGPGNNRRGGINRRPPRNDQQNGRDYQHHNHTTEEVRETREMSSVERAD
SNSSYEGSSRRRRRQKNNNGPSNTNGAVANNNNKPQSAQQPQQQQPPAPG
NKAALNAGDASKQNSGNANAAGGASKPKDASRNGDKQQAGTQQQQPSQVQ
QQQAAQQQQPKPRRNKNRSNNHTDQPSGQQQLAENVKKEGLVNGTSASFL
DH
BO20836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fmr1-PF | 646 | CG6203-PF | 1..646 | 1..646 | 3360 | 100 | Plus |
| Fmr1-PA | 684 | CG6203-PA | 39..684 | 1..646 | 3360 | 100 | Plus |
| Fmr1-PG | 729 | CG6203-PG | 87..729 | 1..646 | 3334 | 99.5 | Plus |
| Fmr1-PK | 681 | CG6203-PK | 39..681 | 1..646 | 3334 | 99.5 | Plus |
| Fmr1-PJ | 681 | CG6203-PJ | 39..681 | 1..646 | 3334 | 99.5 | Plus |
