BO20841.complete Sequence
562 bp assembled on 2009-05-13
GenBank Submission: KX794602
> BO20841.complete
GAAGTTATCAGTCGACATGAATGCAAAAAGAAGTATGTTGACATTCCAAA
GGACGAGGGACAACGATATGGAACCAGAGTCCTACTGGCTGAATCCGCTC
TCATTCATTTTAGCCGATATGTTCGACGACTTGGCGGAGAACTTAAGGCG
GGGAGTTATTACCTTTTTTTGGGACCCCGAGCTGAACATGATCGACGCAT
TGACCCGGGATCAAGTTTGGGAAATGTACCTGTGCGTGCAAAGGATTCCA
AGAGACCTGAGGGGCGCAGAGATCAGCCGGAATAAATGGAGTTTTTTCGT
ACTTCGGGAATTCAGTCACAAAAAGGAAAGAAATGTAAATCTAAAGTGCA
GCTCTAGGCGAAAACGAAATGTTATTAAGGGACTGAAGACCACTTCAATT
TGCAAGCTAAGAAATGCTCGAACTAACGGTACCTGGACTGCTGGACTTTG
GACTCGACCCGGCCATGCGTACAGAGGCCCATCGGAAACGGTGTCGACTT
GGGACACAGTAAAGGACGCAGCGTGGTCAGAAGGGATTGTGGAGGCAAGC
TTTCTAGACCAT
BO20841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-RB | 531 | CG30424-PB | 1..528 | 17..544 | 2640 | 100 | Plus |
| CG30424-RE | 567 | CG30424-PE | 90..564 | 70..544 | 2375 | 100 | Plus |
| CG30424-RD | 1170 | CG30424-PD | 693..1167 | 70..544 | 2375 | 100 | Plus |
| CG30424-RE | 567 | CG30424-PE | 1..54 | 17..70 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-RB | 910 | CG30424-RB | 99..626 | 17..544 | 2640 | 100 | Plus |
| CG30424-RE | 946 | CG30424-RE | 188..662 | 70..544 | 2375 | 100 | Plus |
| CG30424-RD | 1713 | CG30424-RD | 955..1429 | 70..544 | 2375 | 100 | Plus |
| CG30424-RE | 946 | CG30424-RE | 99..152 | 17..70 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24965559..24965788 | 544..315 | 1150 | 100 | Minus |
| 2R | 25286936 | 2R | 24965844..24966041 | 316..119 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 24967146..24967200 | 71..17 | 275 | 100 | Minus |
| 2R | 25286936 | 2R | 24966106..24966154 | 118..70 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:26:34 has no hits.
BO20841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:29 Download gff for
BO20841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 86..613 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:39 Download gff for
BO20841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 99..626 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:55 Download gff for
BO20841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30424-RB | 99..626 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:55 Download gff for
BO20841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24965557..24965788 | 315..546 | 99 | <- | Minus |
| 2R | 24965846..24966041 | 119..314 | 100 | <- | Minus |
| 2R | 24966106..24966153 | 71..118 | 100 | <- | Minus |
| 2R | 24967147..24967200 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:39 Download gff for
BO20841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20854670..20854723 | 17..70 | 100 | | Minus |
| arm_2R | 20853080..20853311 | 315..546 | 99 | <- | Minus |
| arm_2R | 20853369..20853564 | 119..314 | 100 | <- | Minus |
| arm_2R | 20853629..20853676 | 71..118 | 100 | <- | Minus |
BO20841.pep Sequence
Translation from 16 to 562
> BO20841.pep
MNAKRSMLTFQRTRDNDMEPESYWLNPLSFILADMFDDLAENLRRGVITF
FWDPELNMIDALTRDQVWEMYLCVQRIPRDLRGAEISRNKWSFFVLREFS
HKKERNVNLKCSSRRKRNVIKGLKTTSICKLRNARTNGTWTAGLWTRPGH
AYRGPSETVSTWDTVKDAAWSEGIVEASFLDH
BO20841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30424-PB | 176 | CG30424-PB | 1..176 | 1..176 | 948 | 100 | Plus |
| CG30424-PE | 188 | CG30424-PE | 1..188 | 1..176 | 925 | 93.6 | Plus |
| CG30424-PD | 389 | CG30424-PD | 232..389 | 19..176 | 856 | 100 | Plus |
| CG30424-PC | 142 | CG30424-PC | 1..142 | 35..176 | 768 | 100 | Plus |
