BO20843.complete Sequence
973 bp assembled on 2009-05-13
GenBank Submission: KX793808
> BO20843.complete
GAAGTTATCAGTCGACATGAATCGGGTTCAGGTCACGCCGCGGAGCTATC
CCACGAACCTTATCGATAAGGACTGGGGAAATCGAAAGCTTTTTTATACG
AAAGATTCGGAGAACTTTCTTCGCTTAGTCCACGATATGAAGCTCAGGGA
TGACGATGTCTGGATCGTAACTCTACCGAAATGCGGAACCACTTGGATGC
AGGAACTGCTCTGGTTGCTCCTCAACAACTGCGATTTCGAGGGGGCGTTG
GCCAAGGATCAGGAGCTGCGAACTCCGTTTCTCGAGTTCGGTTACTCCGT
TTTTCACGACCCGAACCGCTCATTCGGGCCTATCGAGGACCTGAAGTCCC
CGCGACTGATAAAATCCCACCTTTCGCTTGCCCTCCTCCCATCAAAACTT
TGGGAGGGAAAAAACAAAGTGATCTATGTGTCCCGTAACCCCCTGGACTC
CTATGTCTCCCGATATTATCACGGAGTATCTTTTGGTTTCAATTACGGGA
AGTCACTGCACCAGTACTTCGATGAGGTGCTGGCCTCTGATGATTTCCCC
ACGGAGTTCATTGAACACGCCCACGAGTTCTACCAACTGAGGAACGAGCC
TTGGGTATTCTACACCAGCTTTGAAATGATGAAGAAAGATCTGCGAGGAG
TGATCAACGATGTCTCCAGATTTCTGAATAAACCCATCAACGATCAGCAA
ATGGAGAAACTGCTAAAGCATTTGTCCTTCGCGGAAATGAAGAAAAATCC
CACCACGAATCATCTGTGGGAGTTGGCCCAAGTTCAACACGAAAATGCTG
GGAAAGAAATGCACCCATTCGTGAGACGTGGGGATGTCAATGGCTACAAG
GACGAATTGAAGCCCGAACAAATTGAGAAGGCCAATGTCCGGATACAAGA
GGTTCTTGCGAAGAACGGTGTGACTTTGGACGAACTACTGCTCCTGAAAG
ATCAGGCAAGCTTTCTAGACCAT
BO20843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-RC | 1581 | CG44167-PC | 1..940 | 17..956 | 4700 | 100 | Plus |
| St3-RB | 942 | CG44167-PB | 1..939 | 17..955 | 4695 | 100 | Plus |
| St3-RA | 996 | CG44167-PA | 1..938 | 17..954 | 4690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-RC | 2062 | CG44167-RC | 21..960 | 17..956 | 4700 | 100 | Plus |
| St3-RB | 1101 | CG44167-RB | 21..959 | 17..955 | 4695 | 100 | Plus |
| St3-RA | 1121 | CG44167-RA | 21..958 | 17..954 | 4690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23683729..23684186 | 286..743 | 2290 | 100 | Plus |
| 2R | 25286936 | 2R | 23683397..23683667 | 17..287 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 23684374..23684512 | 817..955 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 23684248..23684320 | 744..816 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:26 has no hits.
BO20843.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:28 Download gff for
BO20843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5431-RB | 17..955 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:16 Download gff for
BO20843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RC | 21..960 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:36 Download gff for
BO20843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| St3-RC | 21..960 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:36 Download gff for
BO20843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23683397..23683665 | 17..285 | 100 | -> | Plus |
| 2R | 23683729..23684186 | 286..743 | 100 | -> | Plus |
| 2R | 23684248..23684320 | 744..816 | 100 | -> | Plus |
| 2R | 23684374..23684512 | 817..957 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:16 Download gff for
BO20843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19570920..19571188 | 17..285 | 100 | -> | Plus |
| arm_2R | 19571252..19571709 | 286..743 | 100 | -> | Plus |
| arm_2R | 19571771..19571843 | 744..816 | 100 | -> | Plus |
| arm_2R | 19571897..19572035 | 817..957 | 98 | | Plus |
BO20843.pep Sequence
Translation from 16 to 973
> BO20843.pep
MNRVQVTPRSYPTNLIDKDWGNRKLFYTKDSENFLRLVHDMKLRDDDVWI
VTLPKCGTTWMQELLWLLLNNCDFEGALAKDQELRTPFLEFGYSVFHDPN
RSFGPIEDLKSPRLIKSHLSLALLPSKLWEGKNKVIYVSRNPLDSYVSRY
YHGVSFGFNYGKSLHQYFDEVLASDDFPTEFIEHAHEFYQLRNEPWVFYT
SFEMMKKDLRGVINDVSRFLNKPINDQQMEKLLKHLSFAEMKKNPTTNHL
WELAQVQHENAGKEMHPFVRRGDVNGYKDELKPEQIEKANVRIQEVLAKN
GVTLDELLLLKDQASFLDH
BO20843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| St3-PB | 313 | CG44167-PB | 1..313 | 1..313 | 1680 | 100 | Plus |
| St3-PC | 526 | CG44167-PC | 1..313 | 1..313 | 1680 | 100 | Plus |
| St3-PA | 331 | CG44167-PA | 1..314 | 1..314 | 1676 | 99.4 | Plus |
| St1-PB | 338 | CG5428-PB | 32..310 | 10..288 | 543 | 41.9 | Plus |
| St4-PB | 346 | CG6704-PB | 38..338 | 21..295 | 302 | 31.2 | Plus |
