BO20851.complete Sequence
1945 bp assembled on 2010-10-20
GenBank Submission: KX794238
> BO20851.complete
GAAGTTATCAGTCGACATGCATCGATGCCGTTTTGGCATCACTAGCGACT
GCGGATTTGTGGTGTGGAAATTTCCGCAAAACAAAAATAAAAATAGACCT
CGGTGTGCCAACTTGCAAGCGATGCACAAAGGGGCGCCTCCTTGGCGAGT
GGGCTGTGCCGACGTGGCATCCGGAATGGAGTGGCAGCTGTCCGGGAATC
CCGCATTGGGAGAAGAGGAAGAGGCTGCAAACAAACAACAACAACAACAA
CTGATAAGAAGTGAAAGGTGGGCCTGCAATCGCAGGACTATTCTCCTGGG
ATGCATCTGCATCATTATCTTGATAGCTGTTCCCTCGAGCAATGCCACCC
ACATCAGCGGACAATTCCAGACGGGCGACTTCTTTCAGTTCCTGGCGAAA
TTCGGCTTCAACAAGGCAGATCTGACACGGCGCAATGCCTATGGATATAT
CTACGGCAATGTCACGTCGACGGATAAGTATGCGGTTCCTTTGACACTCG
TCGTCTTGGACAGAAGGACTTTCCTCGAGTTCTACGGCAACCGCAGTCAA
AGGAGCCGGGAAGCCGCCTGCACAGGGATGTTCTCCCGCCTCCAAAGGAT
CGCCTACGATTCCACGTGCAATCCTCGTGCCAAAAGGGACTTCCTGCGTC
ATGTTCCCTGTCCCGTCAATCAGCTCTGCAGCGATGAAGATGAACCCGGA
AACGTAGTCCCGGGATCGCAGTTCACCTACGTTATCAACCTGGAGGCGGA
ACCAAGATTTTGGTACCTCTCCCTGGTGGCCTGTTATCAAAACAAAAGCA
CCTGCCAGTGGCACGCGCACGAGAGCCTGCCAAGGCTAAGTAAATTGGAC
AGCAATCTCCTCAACACGCTGCACTACGACATACATCTGGTCAACTTGCA
TCCGAACAACTCGGCCGCACATCCACTTACCTACCAGTACTCGTACGATC
AGCAGAATCTACTGGAGATGTACCTGGTGTTCCTGCTCGTCTACATTGTT
CTGCTGCCCATGCAAATTTATGCGGTGCGGCGGCAGAAGCATCCAGTGAC
CAAGTTGTTTACCGTGAGTCTTCTCAGCGAGTTCGTCAGCCTGGCTCTGA
TCACCGCTCACCTGATTCACTATGCGGCCAATGGAGTGGGCGAGCCAAGA
TTGCAGGCAGCTGGAGATGTCCTGGACATCTTGAGCCGCACCACATTTAT
GTTAATTCTGCTGCTGCTGGCCAAAGGATGGGCAGTTACCAGACAGCAAA
TCAGCAGAACGGGATGGATAATTCTGATGTCCATCTGGGTGCCATACTGC
GCGTTCCACGTGTTCCTTTACATCTGGGATAGGACGGAAGTCGATGTGGT
TTCCGACATCGATGAATACCAGACGTGGCCCGGCTGGATAGTTTTAATAC
TACGCACCTCCTTTATGATGTGGTTTCTTTACGAGCTCCGCAACACCATG
AAGTACGAGCACTCAACAAAAAAACTTGACTTTCTACTTCACCTGGGCGC
TTCCAGTTTGGTGTGGTTTATCTACTTACCCATCGTGGCAATTGTGGCGC
TGCAGGTCAGCCCCATGTGGCGCTACAAGTTGCTGCAAGGTATCACCAAC
TCGGCGGACTGCATGGCCTATTGTGTGATGACAGGTCTGTTGTGGCCACA
TAGAGCCGGCCAATATCTGCTCCTAGCGGGCACCAAATATGCGGGCATGG
ATGAGTTGGACGAGTTCAATGAAGCGCCACACATTGTCAGGGAGCGTGAG
AGGCGTCGGAATTCGCCGCCCGATGAAATTGCCGTTGGTACGGGGAGTCG
GGGGATGGTGCTATCCACTAGCATTCCACATTCGCTAAACGGCGATGCCT
GCAACGATCTTTTGGAGGCTGAAGACCTCGACGCGGAGCTGCTCACCGAT
CTTAACAAAAACAGTCATATTGTGGCGGCAAGCTTTCTAGACCAT
BO20851.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9304-RB | 1914 | CG9304-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| CG9304-RA | 1914 | CG9304-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9304-RB | 2785 | CG9304-RB | 10..1920 | 17..1927 | 9555 | 100 | Plus |
| CG9304-RA | 2595 | CG9304-RA | 10..1920 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21973131..21973870 | 17..756 | 3700 | 100 | Plus |
| 2R | 25286936 | 2R | 21974172..21974750 | 755..1333 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 21974938..21975229 | 1404..1695 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 21975288..21975521 | 1694..1927 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 21974803..21974874 | 1333..1404 | 360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 7148..7208 | 208..268 | 125 | 67.2 | Plus |
BO20851.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:58 Download gff for
BO20851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9304-RA | 6..1916 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:10 Download gff for
BO20851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9304-RA | 10..1920 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:38 Download gff for
BO20851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9304-RA | 10..1920 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:38 Download gff for
BO20851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21975289..21975521 | 1695..1929 | 99 | | Plus |
| 2R | 21973131..21973870 | 17..756 | 100 | -> | Plus |
| 2R | 21974174..21974750 | 757..1333 | 100 | -> | Plus |
| 2R | 21974804..21974874 | 1334..1404 | 100 | -> | Plus |
| 2R | 21974939..21975228 | 1405..1694 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:10 Download gff for
BO20851.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17860636..17861375 | 17..756 | 100 | -> | Plus |
| arm_2R | 17861679..17862255 | 757..1333 | 100 | -> | Plus |
| arm_2R | 17862309..17862379 | 1334..1404 | 100 | -> | Plus |
| arm_2R | 17862444..17862733 | 1405..1694 | 100 | -> | Plus |
| arm_2R | 17862794..17863026 | 1695..1929 | 99 | | Plus |
BO20851.pep Sequence
Translation from 16 to 1945
> BO20851.pep
MHRCRFGITSDCGFVVWKFPQNKNKNRPRCANLQAMHKGAPPWRVGCADV
ASGMEWQLSGNPALGEEEEAANKQQQQQLIRSERWACNRRTILLGCICII
ILIAVPSSNATHISGQFQTGDFFQFLAKFGFNKADLTRRNAYGYIYGNVT
STDKYAVPLTLVVLDRRTFLEFYGNRSQRSREAACTGMFSRLQRIAYDST
CNPRAKRDFLRHVPCPVNQLCSDEDEPGNVVPGSQFTYVINLEAEPRFWY
LSLVACYQNKSTCQWHAHESLPRLSKLDSNLLNTLHYDIHLVNLHPNNSA
AHPLTYQYSYDQQNLLEMYLVFLLVYIVLLPMQIYAVRRQKHPVTKLFTV
SLLSEFVSLALITAHLIHYAANGVGEPRLQAAGDVLDILSRTTFMLILLL
LAKGWAVTRQQISRTGWIILMSIWVPYCAFHVFLYIWDRTEVDVVSDIDE
YQTWPGWIVLILRTSFMMWFLYELRNTMKYEHSTKKLDFLLHLGASSLVW
FIYLPIVAIVALQVSPMWRYKLLQGITNSADCMAYCVMTGLLWPHRAGQY
LLLAGTKYAGMDELDEFNEAPHIVRERERRRNSPPDEIAVGTGSRGMVLS
TSIPHSLNGDACNDLLEAEDLDAELLTDLNKNSHIVAASFLDH
BO20851.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9304-PB | 637 | CG9304-PB | 1..637 | 1..637 | 3397 | 100 | Plus |
| CG9304-PA | 637 | CG9304-PA | 1..637 | 1..637 | 3397 | 100 | Plus |
