BO20853.complete Sequence
739 bp assembled on 2009-05-13
GenBank Submission: KX799476
> BO20853.complete
GAAGTTATCAGTCGACATGGCATCCGGCGGCTTAACATGTGTAAAATACT
TGACATTCTTTTGCAATCTTCTTTTTGCGCTCACTGGGCTTCTTATTTTT
CTGGTGGGAGGCATGGTCCAACTAAACTATGCACATTATTCGAACTTCGT
TAGCGATCACGTCTGGACCGCTCCTATCATACTTATGATTGTCGGTGCCG
CTGTGGCAGTCATTTGCTTCTTGGGATGTTGTGGAGCCTTAAAAGAGAGC
AGCTGTATGATACTTAGCTTTGCCCTTCTTGCCGTCGTGATATTTTTGTT
CGAGATCGGACTGGGCCTTGCTGGCTATGTGAAGCATACCGGTCTTCATC
AGATCATGGAGAGTCAGTTTAACTCGACCATGCAGCACTACAAGGAACGG
GCCGACTATCGCGATGCTTGGACTTTGCTGCAAACCGAGCTAGATTGTTG
CGGCATCAATGGGCCCAACGACTGGGAAACCGTTTACCGTAATAGTACCC
TACCTGCAGCCTGCTGCTCTGTAATTAATTTAAGCGAGGCCAAGGAATGT
ACAAATACTCACGCAACTCAGCATGGCTGCTTGCAGAAGCTCTTAGAGAT
TTTGGATTCAAAGACCTTAATTTTGGCCTCCGTTGTTTTGGGAGTGGCGG
GTATACAGATGCTCACTATACTGTTCGCTTGCTGCCTCTATCGTTCGTTT
CGCAGGAGCTACGATCATGTTGCAAGCTTTCTAGACCAT
BO20853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp39D-RB | 708 | CG8666-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp39D-RB | 2359 | CG8666-RB | 186..890 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21356103..21356686 | 79..662 | 2905 | 99.8 | Plus |
| 2L | 23513712 | 2L | 21356738..21356802 | 657..721 | 325 | 100 | Plus |
| 2L | 23513712 | 2L | 21355532..21355594 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:11 has no hits.
BO20853.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:26 Download gff for
BO20853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 190..894 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:40 Download gff for
BO20853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 186..890 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:45 Download gff for
BO20853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp39D-RB | 186..890 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:45 Download gff for
BO20853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21355532..21355594 | 17..79 | 100 | -> | Plus |
| 2L | 21356104..21356682 | 80..658 | 100 | -> | Plus |
| 2L | 21356740..21356802 | 659..723 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:40 Download gff for
BO20853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21355532..21355594 | 17..79 | 100 | -> | Plus |
| arm_2L | 21356104..21356682 | 80..658 | 100 | -> | Plus |
| arm_2L | 21356740..21356802 | 659..723 | 96 | | Plus |
BO20853.pep Sequence
Translation from 16 to 739
> BO20853.pep
MASGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSDHVW
TAPIILMIVGAAVAVICFLGCCGALKESSCMILSFALLAVVIFLFEIGLG
LAGYVKHTGLHQIMESQFNSTMQHYKERADYRDAWTLLQTELDCCGINGP
NDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILDSKT
LILASVVLGVAGIQMLTILFACCLYRSFRRSYDHVASFLDH
BO20853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp39D-PB | 235 | CG8666-PB | 1..235 | 1..235 | 1241 | 100 | Plus |
| Tsp47F-PB | 239 | CG9033-PB | 1..235 | 1..230 | 380 | 35.1 | Plus |
| Tsp29Fa-PC | 248 | CG9494-PC | 3..239 | 1..229 | 352 | 29.5 | Plus |
| Tsp29Fa-PB | 248 | CG9494-PB | 3..239 | 1..229 | 352 | 29.5 | Plus |
| Tsp29Fa-PA | 248 | CG9494-PA | 3..239 | 1..229 | 352 | 29.5 | Plus |
