Clone BO20868 Report

Search the DGRC for BO20868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:208
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG17362-RA
Protein status:BO20868.pep: Imported from assembly
Sequenced Size:583

Clone Sequence Records

BO20868.complete Sequence

583 bp assembled on 2009-05-13

GenBank Submission: KX799918

> BO20868.complete
GAAGTTATCAGTCGACATGAAAAACGAGATTCGACTGATATGTTGGTATA
TAAACCAGAGGATTGAGCTTTCTTCGTTTAGATCACAAAATCTCCCCAAA
ACGAAAATGAAACTTCTTCTGGTTCTGGCATTGGCAGTCTTCGTAGCCCA
CGTGGCTGTGGCCCAGACAACTGATTCGTCTGACGATGGAGATTACTCTT
ACGATTACGCTGATGACAACGATACTGCCGGTAGCTCCGAAGACAACACT
GCTGATTCTGGAGACACTAGTGATAGCTCCACTGACGTCGACAGTGGAAA
CGACTCTGGGGACGTCGATTCCTATGACGACTACGAGGGCTCTAGCGATG
TTACGGAAGCACCAACTGCTGCTCCAGTTGTCAAAAAGAACAAAAGAGCT
GGTGCCAGGAAAAACAACAGGAACAACAAGAATAAGGCAGCAGCTAAACG
TCGCAATGCCGCCGCTGCCAAGAAAAGTAATAACAAGAAGGCGGCTAAGA
AGCGAACACCTGTTGCCGCCAAGAAGCGGGCAAATGCTGGACCCAACAAA
CGTAGGCGCTCTGGAGCAAGCTTTCTAGACCAT

BO20868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-RB 462 CG17362-PB 1..459 107..565 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-RB 565 CG17362-RB 1..494 72..565 2470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13986564..13987113 16..565 2750 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:01:58 has no hits.

BO20868.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:23 Download gff for BO20868.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RA 620..1168 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:17 Download gff for BO20868.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RB 1..494 72..567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:19 Download gff for BO20868.complete
Subject Subject Range Query Range Percent Splice Strand
CG17362-RB 1..494 72..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:19 Download gff for BO20868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13986565..13987113 17..567 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:17 Download gff for BO20868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13979665..13980213 17..567 99   Plus

BO20868.pep Sequence

Translation from 16 to 583

> BO20868.pep
MKNEIRLICWYINQRIELSSFRSQNLPKTKMKLLLVLALAVFVAHVAVAQ
TTDSSDDGDYSYDYADDNDTAGSSEDNTADSGDTSDSSTDVDSGNDSGDV
DSYDDYEGSSDVTEAPTAAPVVKKNKRAGARKNNRNNKNKAAAKRRNAAA
AKKSNNKKAAKKRTPVAAKKRANAGPNKRRRSGASFLDH

BO20868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17362-PB 153 CG17362-PB 1..153 31..183 772 100 Plus
CG9040-PA 161 CG9040-PA 1..161 31..183 253 42.9 Plus
Pig1-PB 172 CG10790-PB 4..168 29..184 190 35.1 Plus