BO20869.complete Sequence
976 bp assembled on 2009-05-13
GenBank Submission: KX798708
> BO20869.complete
GAAGTTATCAGTCGACATGCCAGCTGCTGTGCGCAAGTTCCGCCGCGAGA
CCAGTGAAATCAGCTGCTGTCTGAAGTACCTTTTGTTCGCCAGCAATGTG
ATCCTGTGGCTCTCGGCCCTGCTGGTCCTCTCCGTTGGCATCTGGGCCTG
GAGCGAGAAGGGCATGTTCCGCAACATTGCGCGGCTGCACTTCATCGCCC
TGGACCCGGCCTTCGTCCTGATCATCCTGGGAGGCGTCACCTTCCTACTG
GGCTTCATGGGCAGCGTGGGCGCCTTGCGCGAGAACACCTGCCTCCTGGG
GGCGTACGCCATCTTCTTGAGTGTCTTGCTTATCGCAGAGATCGGCTTCT
GTGCCGTGGCCTTCGTGCTCAAGGACAAGGGCTGGATCAAAGACCAGGCC
ACCGAGGGACTCAAGGCCTTCATTCGCCACTATCGCGAGGACGCAGACCA
GCAGAATCTCATTGATTGGATCCAGGAGGATTGGTTGCAGTGTTGCGGCA
TTGATGGTCCCAAGGACTGGGACAGCAACAACTACTTCAATTGCTCGTCT
ATCGCTATTGGCAGCAGGGAGGCGTGCGGAGTGCCATTCTCCTGCTGCCG
CAGACGTCCGCAGGAGGTGATCAAGAACAAGCAATGCGGCTACGATGTAC
GCAAGGAGGGATATCCGGTGGATAGGAATATACATGAGCGTGGCTGCTTG
CGCGCTGGCGAGGATTGGCTGGAGGCCCATCTGATTAGTGTGGCGATTGG
CTGCGTGGCTCTGCTCGTCCTGCAGGGCATGGAGTTGTCCAAAATAATCT
ACGAAAAGGGCTGTGTTCAAGCAGGCGAAGAATGGATGGAGCACAACTTG
ATTATTATTTCCGCAACTGTTATAGTTGTGATGTTTTTTCAGATCTTGGG
CATTTGCTTTGCTCAGAACCTGCGTGCCGATATCTACACTCAAAAGTCAA
AGTGGCACGCAAGCTTTCTAGACCAT
BO20869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-RB | 945 | CG9093-PB | 1..942 | 17..958 | 4710 | 100 | Plus |
| Tsp26A-RD | 828 | CG9093-PD | 1..759 | 17..775 | 3795 | 100 | Plus |
| Tsp26A-RC | 834 | CG9093-PC | 1..648 | 17..664 | 3240 | 100 | Plus |
| Tsp26A-RD | 828 | CG9093-PD | 757..825 | 890..958 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-RB | 3030 | CG9093-RB | 85..1026 | 17..958 | 4710 | 100 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 85..843 | 17..775 | 3795 | 100 | Plus |
| Tsp26A-RC | 2919 | CG9093-RC | 85..732 | 17..664 | 3240 | 100 | Plus |
| Tsp26A-RD | 2913 | CG9093-RD | 841..909 | 890..958 | 345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6000312..6000599 | 17..304 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 6000804..6001083 | 385..664 | 1400 | 100 | Plus |
| 2L | 23513712 | 2L | 6001474..6001593 | 773..892 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 6001159..6001270 | 665..776 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 6000663..6000744 | 304..385 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 6001660..6001734 | 884..958 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:43:08 has no hits.
BO20869.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:21 Download gff for
BO20869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 82..1023 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:27 Download gff for
BO20869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 85..1026 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:01 Download gff for
BO20869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp26A-RB | 85..1026 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:01 Download gff for
BO20869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6000312..6000599 | 17..304 | 100 | -> | Plus |
| 2L | 6000664..6000744 | 305..385 | 100 | -> | Plus |
| 2L | 6000805..6001083 | 386..664 | 100 | -> | Plus |
| 2L | 6001159..6001269 | 665..775 | 100 | -> | Plus |
| 2L | 6001477..6001593 | 776..892 | 100 | -> | Plus |
| 2L | 6001669..6001734 | 893..960 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:27 Download gff for
BO20869.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6000664..6000744 | 305..385 | 100 | -> | Plus |
| arm_2L | 6000312..6000599 | 17..304 | 100 | -> | Plus |
| arm_2L | 6000805..6001083 | 386..664 | 100 | -> | Plus |
| arm_2L | 6001159..6001269 | 665..775 | 100 | -> | Plus |
| arm_2L | 6001477..6001593 | 776..892 | 100 | -> | Plus |
| arm_2L | 6001669..6001734 | 893..960 | 97 | | Plus |
BO20869.pep Sequence
Translation from 16 to 976
> BO20869.pep
MPAAVRKFRRETSEISCCLKYLLFASNVILWLSALLVLSVGIWAWSEKGM
FRNIARLHFIALDPAFVLIILGGVTFLLGFMGSVGALRENTCLLGAYAIF
LSVLLIAEIGFCAVAFVLKDKGWIKDQATEGLKAFIRHYREDADQQNLID
WIQEDWLQCCGIDGPKDWDSNNYFNCSSIAIGSREACGVPFSCCRRRPQE
VIKNKQCGYDVRKEGYPVDRNIHERGCLRAGEDWLEAHLISVAIGCVALL
VLQGMELSKIIYEKGCVQAGEEWMEHNLIIISATVIVVMFFQILGICFAQ
NLRADIYTQKSKWHASFLDH
BO20869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp26A-PB | 314 | CG9093-PB | 1..314 | 1..314 | 1672 | 100 | Plus |
| Tsp26A-PD | 275 | CG9093-PD | 1..275 | 1..314 | 1422 | 87.6 | Plus |
| Tsp26A-PC | 277 | CG9093-PC | 1..277 | 1..314 | 1345 | 82.9 | Plus |
| Tsp3A-PB | 304 | CG10742-PB | 39..304 | 15..315 | 371 | 31.4 | Plus |
| Tsp3A-PA | 304 | CG10742-PA | 39..304 | 15..315 | 371 | 31.4 | Plus |
