BO20870.complete Sequence
832 bp assembled on 2009-05-13
GenBank Submission: KX797250
> BO20870.complete
GAAGTTATCAGTCGACATGACAGCAATGAATGCGGATGAGACAAAGCTGG
CTGGAATGCCTCAAGGAGCTGAGGAGGAGCAGGAACCGGAGAGGGAGCAG
AAGAAGGAGAGCGATGGAGCAGCAGCTGCAGCAGGAGTACAGTGTGATCC
TGATAGCAGAATAGTGGCTCCGCCGCCCAGGCAGCGGACTCTGACAAGGA
CGGCCGAACTGGACGCGGACTGCGAGGACATCGAGTTAGATGCCGACGAT
GGTTTGGACGATGCGGCGGATAGCATCACCTTGGAGTTGGCCCTATCGCC
GCACAGCAGCGCCACGCCCACGCCCTCGCCCACCACCGCCGACGAGGATT
TCGCCCAGCTGGACAACAGCAAGCCCTTCAAGATCAAGGACATCACGAGG
AACATCCGCAAGGCAGTTGTGGCCACAACGCTGTCGGAGCTGCGGACGAA
GGTGTCGCTGAAATTTGAGCGGGCTCAGCCGGCGATACACCTGGATTGCG
ATGGCACCGAGGTCGACGATGAGGAGTACTTCAGCACTCTGGAGCCAAAT
GCCGAATTGATTGCCGTCTTTCCTGGCGAGCAGTGGCGCGATCCCAGTGA
CTACAATGCCAATCTGCGTCGCACATCGCTGGATGCACAGCGTCTGCGGA
GTCTGGTGAGCAAACTGCAGCCGAACTATATGAACGATGATGATTTGGAT
AAGCTGTCGAACATGGATCCCAACTCCCTGGTGGATATCACGGGTCGGGA
GCCCAAGGACAACGAATACTCAGCCAGAAGCGATGCCGCACGGCTATCAA
CGGAATTGTCTTGCGCAAGCTTTCTAGACCAT
BO20870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-3-RA | 801 | CG8364-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
| Drep-3-RB | 801 | CG8364-PB | 1..798 | 17..814 | 3990 | 100 | Plus |
| Drep-1-RB | 921 | CG8357-PB | 157..273 | 488..604 | 180 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-3-RA | 1799 | CG8364-RA | 176..975 | 15..814 | 4000 | 100 | Plus |
| Drep-3-RB | 1558 | CG8364-RB | 181..980 | 15..814 | 4000 | 100 | Plus |
| CG44314-RC | 974 | CG44314-RC | 446..813 | 15..382 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12056019..12056386 | 15..382 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 12061821..12062042 | 593..814 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 12061502..12061717 | 377..592 | 1065 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:50 has no hits.
BO20870.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:19 Download gff for
BO20870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep3-RA | 179..976 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:45 Download gff for
BO20870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-3-RB | 183..980 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:55 Download gff for
BO20870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-3-RB | 183..980 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:55 Download gff for
BO20870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12056021..12056386 | 17..382 | 100 | -> | Plus |
| 2R | 12061508..12061717 | 383..592 | 100 | -> | Plus |
| 2R | 12061821..12062042 | 593..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:45 Download gff for
BO20870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7943526..7943891 | 17..382 | 100 | -> | Plus |
| arm_2R | 7949013..7949222 | 383..592 | 100 | -> | Plus |
| arm_2R | 7949326..7949547 | 593..816 | 99 | | Plus |
BO20870.pep Sequence
Translation from 16 to 832
> BO20870.pep
MTAMNADETKLAGMPQGAEEEQEPEREQKKESDGAAAAAGVQCDPDSRIV
APPPRQRTLTRTAELDADCEDIELDADDGLDDAADSITLELALSPHSSAT
PTPSPTTADEDFAQLDNSKPFKIKDITRNIRKAVVATTLSELRTKVSLKF
ERAQPAIHLDCDGTEVDDEEYFSTLEPNAELIAVFPGEQWRDPSDYNANL
RRTSLDAQRLRSLVSKLQPNYMNDDDLDKLSNMDPNSLVDITGREPKDNE
YSARSDAARLSTELSCASFLDH
BO20870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-3-PA | 266 | CG8364-PA | 1..266 | 1..266 | 1364 | 100 | Plus |
| Drep-3-PB | 266 | CG8364-PB | 1..266 | 1..266 | 1364 | 100 | Plus |
| Drep-1-PA | 297 | CG8357-PA | 9..168 | 116..245 | 382 | 51.9 | Plus |
| Drep-1-PB | 306 | CG8357-PB | 9..168 | 116..245 | 382 | 51.9 | Plus |
| Drep-2-PB | 549 | CG1975-PB | 59..151 | 101..190 | 150 | 38.7 | Plus |
