BO20871.complete Sequence
1420 bp assembled on 2009-05-13
> BO20871.complete
GAAGTTATCAGTCGACATGGTTGGTTTAACCCGAAATACCATGCTGAAAA
CTCGGGGTATTGTGCTTGGCATCAGCAGGTCGTACACCGCCAAGGCGAAG
AGGGGTGTGCTGGCGCAGGACAAGTCGAAGATCAAGGAGTACTCACCGAA
GACGACGGACAGCCATGAGCACCGAGTTTACGTGTGGGGCTTTCAGGAAA
CCGGCGCTCTCGGTCTCCAGACCAACGTGAAGAAGGCCAAGGAACGCTAC
ACGGAGATGGTGCACCATCCCACCCGCTTGCAGTTCTCCAACAACAACGA
AATCACGGATGTGGCCGCCGGCTACGGGTTCACGGTCTACGCCGTGAATA
GAGATGACGGAGAGACGCTCTTTGGCAGCGGTTTGAACACCGACTCCCAA
CTGGGTTTCCAGGTGAAGGGAAATCCCAATGATCCGGCCAACCTTGACGT
GATCATTTATCCTACAGCCATTAAACTGCCGAGAGTTCAGGGAGAAACAG
ACGAGGACATGCGTGTGAAGAGCATGTCGGCGGGTAGAGCTCACCTGGTG
GTTCTGACCCAAAACGGAACCATTTTCACCCTGGGAAACAATTCGTACGG
CCAATGTGGCCGCTCCATCATAGAGGAGGAGCGGTACAGCAAGAGTGCCC
TGATCCACAGGATATCGCAGGAAGATATATGCGGCAAGGAGGATGAGGTG
GTCCAGGTGGAGTGCGGCCAGGACCACAGCATGTTTCTTACCAAAAAGGG
ACGCATTTACACATGTGGCTGGGGTGCGGATGGTCAAACAGGTCAGGGAA
ACTACCACACCGCCGGGCAGATAACCCTGATTGGAGGAGATGTGGAAAAG
GAGAAGATTGTGCGGCTCAGCTGCTCCTCGGACTGCGTTTTGGCCCTTAA
CGAGGCGGGCGATGCCTTTGGCTGGGGCAATTCTGAGTACGGACAGCTAG
ATGACTCAGAGCTGGCCGAAACCCAAATAAATATCCCTAGAGCTCTCAAA
CTAACGAAGTCCATCGGGAAAATCAAGGATGTGGCTGCGGGAGGCTCATT
TTGCATGGCCCTCAACGACCAGGGTCTGGTGTACACCTGGGGCTTTGGCA
TCCTCGGCTTCGGACCCTTCGTGGAGCAAACATCCAAGCCGCAGCATCTG
TTGCCGCCTTTATTCGGACGAAATGACTTCAGCAACGAAACCACAGTGGT
TTCCATCGGATGCGGAGTGTTTCACATGGGCGCCGTCAACTCGGACGGAG
ATCTCTTCATGTGGGGCAAGAACAGGTTCGGGCATCTGGGGCTGGGACAC
AAGAAGGACCAGTTCTTTCCCTTTAAGGCGGCCATCAACGGAAAGGTCAC
CAAAGTGGCCTACGGAGTGGATCACACCATTGCCTTGTGCAAGCCGTTCT
TCGCAAGCTTTCTAGACCAT
BO20871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3862-RA | 1365 | CG3862-PA | 1..1362 | 41..1402 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3862-RA | 1533 | CG3862-RA | 39..1426 | 15..1402 | 6940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 824436..825823 | 1402..15 | 6940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:37:59 has no hits.
BO20871.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:18 Download gff for
BO20871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3862-RA | 1..1375 | 28..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:02 Download gff for
BO20871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3862-RA | 41..1426 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:12 Download gff for
BO20871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3862-RA | 41..1426 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:12 Download gff for
BO20871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 824434..825821 | 17..1404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:02 Download gff for
BO20871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 824434..825821 | 17..1404 | 99 | | Minus |
BO20871.pep Sequence
Translation from 16 to 1420
> BO20871.pep
MVGLTRNTMLKTRGIVLGISRSYTAKAKRGVLAQDKSKIKEYSPKTTDSH
EHRVYVWGFQETGALGLQTNVKKAKERYTEMVHHPTRLQFSNNNEITDVA
AGYGFTVYAVNRDDGETLFGSGLNTDSQLGFQVKGNPNDPANLDVIIYPT
AIKLPRVQGETDEDMRVKSMSAGRAHLVVLTQNGTIFTLGNNSYGQCGRS
IIEEERYSKSALIHRISQEDICGKEDEVVQVECGQDHSMFLTKKGRIYTC
GWGADGQTGQGNYHTAGQITLIGGDVEKEKIVRLSCSSDCVLALNEAGDA
FGWGNSEYGQLDDSELAETQINIPRALKLTKSIGKIKDVAAGGSFCMALN
DQGLVYTWGFGILGFGPFVEQTSKPQHLLPPLFGRNDFSNETTVVSIGCG
VFHMGAVNSDGDLFMWGKNRFGHLGLGHKKDQFFPFKAAINGKVTKVAYG
VDHTIALCKPFFASFLDH
BO20871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3862-PA | 454 | CG3862-PA | 1..454 | 9..462 | 2407 | 100 | Plus |
| CG9153-PC | 1062 | CG9153-PC | 39..322 | 164..457 | 259 | 26.2 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 2988..3349 | 54..456 | 259 | 27.1 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 39..317 | 164..457 | 251 | 25.9 | Plus |
| CG9153-PB | 1058 | CG9153-PB | 39..317 | 164..457 | 251 | 25.9 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 7..241 | 186..435 | 240 | 28.7 | Plus |
| CG9153-PC | 1062 | CG9153-PC | 7..246 | 186..435 | 237 | 28.5 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 4140..4413 | 169..457 | 237 | 27.1 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 2992..3298 | 122..457 | 227 | 27 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 3026..3248 | 234..459 | 215 | 31.6 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 601..853 | 149..419 | 184 | 26 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 4188..4415 | 165..409 | 175 | 26 | Plus |
| HERC2-PC | 4912 | CG11734-PC | 4154..4418 | 51..354 | 172 | 23.7 | Plus |
