BO20875.complete Sequence
652 bp assembled on 2009-05-13
GenBank Submission: KX798091
> BO20875.complete
GAAGTTATCAGTCGACATGGTCGCTCAGTGGAAAATCATCAACGAGAACT
ACAAAAATCTGGAGGGCTACAAGCGTGTGGCCTGGCCACCGGCCTCCGAG
GAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGAGTCCGGC
TCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACAGCAGCAG
CTGCCGCTCCACCTCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGAT
CTGCAGCAGCAGCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGC
TGGCCAGGATAGCTACCGGGGCGCCAGTCCCGGCATCATCACCCTGCGCA
AGGAGGCTCCAGTCAGCCAGAAGCCTGCACCAGTCTACACTTCGCAGCCA
GCCGCCGTCAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTTGAAATG
GCCACCACCGGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGGAACGAC
GCCAGTTGGCGTTGGGTCCCGTCTGCCGTCCCAGGAGAGTTAACCGGGAC
TACACACCCTTCTTTGCCAAGCACCAGTTGAACAATGGCTATCCCAGCTA
CAAGGTGCCTCCGGGCACCCAGCACATTTTCGGCGCAAGCTTTCTAGACC
AT
BO20875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RI | 621 | CG43897-PI | 1..618 | 17..634 | 3090 | 100 | Plus |
| CG43897-RR | 1341 | CG43897-PR | 919..1338 | 215..634 | 2100 | 100 | Plus |
| CG43897-RQ | 900 | CG43897-PQ | 478..897 | 215..634 | 2100 | 100 | Plus |
| CG43897-RR | 1341 | CG43897-PR | 1..201 | 17..217 | 1005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RI | 2548 | CG43897-RI | 599..1217 | 16..634 | 3095 | 100 | Plus |
| CG43897-RR | 3268 | CG43897-RR | 1518..1937 | 215..634 | 2100 | 100 | Plus |
| CG43897-RQ | 2827 | CG43897-RQ | 1077..1496 | 215..634 | 2100 | 100 | Plus |
| CG43897-RR | 3268 | CG43897-RR | 599..800 | 16..217 | 1010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832475..9832680 | 215..420 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 65..217 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 419..548 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833014 | 547..634 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 9830020..9830070 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:40:43 has no hits.
BO20875.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:17 Download gff for
BO20875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RI | 600..1217 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:15 Download gff for
BO20875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RI | 600..1217 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:10 Download gff for
BO20875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RI | 600..1217 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:10 Download gff for
BO20875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9830021..9830069 | 17..65 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 66..217 | 100 | -> | Plus |
| 3L | 9832478..9832679 | 218..419 | 100 | -> | Plus |
| 3L | 9832739..9832866 | 420..547 | 100 | -> | Plus |
| 3L | 9832928..9833014 | 548..636 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:15 Download gff for
BO20875.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9823121..9823169 | 17..65 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 66..217 | 100 | -> | Plus |
| arm_3L | 9825578..9825779 | 218..419 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 420..547 | 100 | -> | Plus |
| arm_3L | 9826028..9826114 | 548..636 | 97 | | Plus |
BO20875.pep Sequence
Translation from 16 to 652
> BO20875.pep
MVAQWKIINENYKNLEGYKRVAWPPASEERIIREFTPQPQTQSPAPGAGG
YYPQAHAPTAAAAAPPQPQLPYSQDQTDLQQQQQQQQQQYPGAYAGQDSY
RGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRGDLKWPPPEY
KEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNGYPSYKVPPG
TQHIFGASFLDH
BO20875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PI | 206 | CG43897-PI | 1..206 | 1..206 | 1116 | 100 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 108..299 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PE | 315 | CG43897-PE | 124..315 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PG | 354 | CG43897-PG | 163..354 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PF | 354 | CG43897-PF | 163..354 | 18..206 | 782 | 78.5 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 1..129 | 1..128 | 413 | 65.7 | Plus |
| CG43897-PE | 315 | CG43897-PE | 33..145 | 17..128 | 327 | 61 | Plus |
| CG43897-PG | 354 | CG43897-PG | 72..184 | 17..128 | 327 | 61 | Plus |
