BO20887.complete Sequence
2374 bp assembled on 2010-10-20
GenBank Submission: KX794933
> BO20887.complete
GAAGTTATCAGTCGACATGCGGGCGGTGCGCCGGGCGAATGCAACTGGTT
CCTTCTCCTGGATCGGATCCGATGGCTGGAGTGCCCGGAATTTGGTGTCC
GACGACTACGAGCCGGAGGTGGAAGGCACGCTGTCTGTGCAGCCGCAGGC
GAATCCGGTGCGCGGGTTCGAGGAGTACTTCCTCAGTCTGACGGTGGAGA
ACAATCAACGCAATCCCTGGTTTGTGGAATTCTGGGAGGATCACTTTCAG
TGCCGATATCCCGGCAGTACGAGCACTCCGTACAATAACTACACCAAACA
GTGCACCACAAAGGAGCGACTTTCACGCCAGAACACTGACTTCGAGGACC
AGTTGCAGTTTGTCAGCGATGCGGTGATGGCATTTGCATACGCCCTAAGG
GATATGCACCGCGACCTGTGCGGCGGAGGTCCTTCTCTCTGCGAGGCCAT
GAAGCCAACGAAGGGTGCAGACTTGCTGAAATATTTGCGAAAAGTGGAGT
TTGAGGGCCTCAGCGGCGACGAGTTCCGCTTCGACGGGAACGGCGACGGT
CCCGCCCGGTACAACATCATCCACTTCAAGCAGTCCCAGGCGGGACAGTA
CCACTGGGTCAAGGTGGGCGAGTACACCGAGGGCGAGCTGCGGCTTAATA
TGACGGAGGTGAAGTTTAAGCGGCTGAGTCCCAAGCCGCCGGAGTCTGTC
TGCAGCCTGCCATGTCTTGTGGGTCAGGCCAAGAAGTACGTGGAAGGCGA
GAGCTGCTGTTGGCACTGCTTCAATTGCACAACCTATCAAATCCGCCACC
CGGATGACGAGACCCATTGCAAGCTGTGCAAGCTGGGCACTCTTCCCGAC
GCCCACAAGCAGTACTGCCGCCCCATCCCGGAGATATATTTGCGTCCGGA
GTCCGCTTGGGCCATCGGTGCTATGGCGTTCAGTGCGACCGGGATCTTAG
TAACGCTCTTCGTAATGGGCGTATTTGTCAGGCACAACGACACGCCCATA
GTGCGTGCCTCTGGTCGGGAGCTGAGCTACATCCTGCTGGCGGGGATTTT
CATGTGCTACGGTGTCACCTTTGCCCTGGTCCTGAAGCCGACCAACATAG
TGTGTGCCATTCAGCGGTTTGGTGTCGGCTTCTGCTTCACGGTCGTTTAT
GCAGCACTGTTGACCAAAACGAATCGCATTGCACGGATCTTCAAAGCGGG
CAAACAATCCGCCAAGAGGCCCTCCTTCATTAGTCCCAAGTCCCAGCTGG
TAATCTGTGCGTGCCTGGTTAGTGTGCAGATACTCATCAACGGCGTTTGG
ATGGTAATTGCGCCATCACATGCCATGCACCATTATCCCACACGCGAGGA
TAATCTGCTCGTCTGCGACTCGTACATCGACGCCTCCTACATGATTGCGT
TCTCCTACCCAATCTTCCTGATTGTTATTTGCACGGTCTACGCGGTGCTC
ACGCGAAAGATTCCGGAGGCTTTCAACGAATCGAAGCATATTGGATTCAC
CATGTACACGACTTGTGTGATTTGGCTGGCTTTTGTACCGCTCTACTTCG
GAACCGCCAACCACGTTCCGCTGCGCATCACCAGCATGTCGGTGACCATC
AGCTTATCCGCCAGCGTGACCATCGCCTGTCTCTTTTCGCCCAAGCTGTA
CATAATACTCATACGCCCCGAGCGCAACGTGCGCCAGAGTATGATGCCGC
CTCGCTACGGCAACATGCACCGCACCGCTGGCACAGGACCCTCGTCCATG
ATGGCCGCCGCCGTGGTGACCGCCGCCACCTGTGCCCAGGAGGAGAAGAT
CCAGAAGCATATCACTCCCACAAACACAGAAAACTCGCTAAAGACGAAGA
AATTGTGCGAAATGGCCACTCAGACAATTTCCAGTATAATCACGTCGCTG
GACATCAATGCGTACAATCAAATACCATATGCCGATCAATATGTGCCAAA
CAATGCCACAACGGCCACGACCACGCCCACAGATAAGGGCAGTGGCAACG
GCAACAGCAACAGCAATAGCAATACGAATGGTAGTAGCAATAGCAACAGC
AACAGCAATGGCGATGGCGATGTGGCAACAGAGCAAGTCGTGGCCAACAA
TAATAAAATCAATCAGCGACAACATGGCCAGCCGGCCGTGGCATTTGCCA
TCACATCGACTAACAATCACATAAGCGGCCCAGCAGCAACCATAACAACA
ACAGCGGCAACTGGCGAAACAACAACTGAGGCGCTGGTGGCTACAATAAC
AACTCCATTGGCAACGGTGGATGGCAGCGAAACCATGTCCGTGGCTCCCA
ACAATGGGCATGGAAACAACGGGAGCCAACGTCCGCCGGTCCTGCAAACA
AACTTAGCAAGCTTTCTAGACCAT
BO20887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtt-RG | 4419 | CG30361-PG | 1906..4245 | 17..2356 | 11685 | 100 | Plus |
| mtt-RF | 3747 | CG30361-PF | 1405..3744 | 17..2356 | 11685 | 100 | Plus |
| mtt-RE | 3288 | CG30361-PE | 946..3285 | 17..2356 | 11685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtt-RG | 7328 | CG30361-RG | 3527..5866 | 17..2356 | 11685 | 100 | Plus |
| mtt-RF | 5422 | CG30361-RF | 1621..3960 | 17..2356 | 11685 | 100 | Plus |
| mtt-RE | 6368 | CG30361-RE | 2567..4906 | 17..2356 | 11685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8475418..8475947 | 2356..1827 | 2650 | 100 | Minus |
| 2R | 25286936 | 2R | 8479852..8480070 | 1494..1276 | 1095 | 100 | Minus |
| 2R | 25286936 | 2R | 8481216..8481407 | 982..791 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 8476476..8476661 | 1829..1644 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 8482855..8483028 | 400..227 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 8480181..8480344 | 1279..1116 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 8479324..8479476 | 1645..1493 | 765 | 100 | Minus |
| 2R | 25286936 | 2R | 8481948..8482098 | 656..506 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 8480423..8480562 | 1118..979 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 8481644..8481778 | 790..656 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 8483132..8483242 | 227..117 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 8482605..8482718 | 507..394 | 540 | 98.2 | Minus |
| 2R | 25286936 | 2R | 8483601..8483704 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2411 | 2181..2267 | 147 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2466 | 2181..2265 | 144 | 65.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 118..147 | 2180..2209 | 132 | 93.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11296..11325 | 2180..2209 | 132 | 93.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6878 | 2180..2336 | 130 | 56.2 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4354..4422 | 2108..2040 | 120 | 63.8 | Minus |
BO20887.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:52 Download gff for
BO20887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mXr-RE | 2188..4527 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:45 Download gff for
BO20887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2567..4906 | 17..2358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:24 Download gff for
BO20887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtt-RE | 2567..4906 | 17..2358 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:24 Download gff for
BO20887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8482856..8483027 | 228..399 | 100 | <- | Minus |
| 2R | 8483132..8483240 | 119..227 | 100 | <- | Minus |
| 2R | 8483603..8483704 | 17..118 | 100 | | Minus |
| 2R | 8482606..8482712 | 400..506 | 99 | <- | Minus |
| 2R | 8475414..8475944 | 1830..2358 | 99 | <- | Minus |
| 2R | 8476476..8476659 | 1646..1829 | 100 | <- | Minus |
| 2R | 8479324..8479475 | 1494..1645 | 100 | <- | Minus |
| 2R | 8479853..8480066 | 1280..1493 | 100 | <- | Minus |
| 2R | 8480181..8480343 | 1117..1279 | 100 | <- | Minus |
| 2R | 8480425..8480559 | 982..1116 | 100 | <- | Minus |
| 2R | 8481217..8481407 | 791..981 | 100 | <- | Minus |
| 2R | 8481644..8481777 | 657..790 | 100 | <- | Minus |
| 2R | 8481948..8482097 | 507..656 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:45 Download gff for
BO20887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4362919..4363449 | 1830..2358 | 99 | <- | Minus |
| arm_2R | 4363981..4364164 | 1646..1829 | 100 | <- | Minus |
| arm_2R | 4366829..4366980 | 1494..1645 | 100 | <- | Minus |
| arm_2R | 4367358..4367571 | 1280..1493 | 100 | <- | Minus |
| arm_2R | 4367686..4367848 | 1117..1279 | 100 | <- | Minus |
| arm_2R | 4367930..4368064 | 982..1116 | 100 | <- | Minus |
| arm_2R | 4368722..4368912 | 791..981 | 100 | <- | Minus |
| arm_2R | 4369149..4369282 | 657..790 | 100 | <- | Minus |
| arm_2R | 4369453..4369602 | 507..656 | 100 | <- | Minus |
| arm_2R | 4370111..4370217 | 400..506 | 99 | <- | Minus |
| arm_2R | 4370361..4370532 | 228..399 | 100 | <- | Minus |
| arm_2R | 4370637..4370745 | 119..227 | 100 | <- | Minus |
| arm_2R | 4371108..4371209 | 17..118 | 100 | | Minus |
BO20887.pep Sequence
Translation from 16 to 2374
> BO20887.pep
MRAVRRANATGSFSWIGSDGWSARNLVSDDYEPEVEGTLSVQPQANPVRG
FEEYFLSLTVENNQRNPWFVEFWEDHFQCRYPGSTSTPYNNYTKQCTTKE
RLSRQNTDFEDQLQFVSDAVMAFAYALRDMHRDLCGGGPSLCEAMKPTKG
ADLLKYLRKVEFEGLSGDEFRFDGNGDGPARYNIIHFKQSQAGQYHWVKV
GEYTEGELRLNMTEVKFKRLSPKPPESVCSLPCLVGQAKKYVEGESCCWH
CFNCTTYQIRHPDDETHCKLCKLGTLPDAHKQYCRPIPEIYLRPESAWAI
GAMAFSATGILVTLFVMGVFVRHNDTPIVRASGRELSYILLAGIFMCYGV
TFALVLKPTNIVCAIQRFGVGFCFTVVYAALLTKTNRIARIFKAGKQSAK
RPSFISPKSQLVICACLVSVQILINGVWMVIAPSHAMHHYPTREDNLLVC
DSYIDASYMIAFSYPIFLIVICTVYAVLTRKIPEAFNESKHIGFTMYTTC
VIWLAFVPLYFGTANHVPLRITSMSVTISLSASVTIACLFSPKLYIILIR
PERNVRQSMMPPRYGNMHRTAGTGPSSMMAAAVVTAATCAQEEKIQKHIT
PTNTENSLKTKKLCEMATQTISSIITSLDINAYNQIPYADQYVPNNATTA
TTTPTDKGSGNGNSNSNSNTNGSSNSNSNSNGDGDVATEQVVANNNKINQ
RQHGQPAVAFAITSTNNHISGPAATITTTAATGETTTEALVATITTPLAT
VDGSETMSVAPNNGHGNNGSQRPPVLQTNLASFLDH
BO20887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtt-PG | 1472 | CG30361-PG | 636..1415 | 1..780 | 4133 | 100 | Plus |
| mtt-PF | 1248 | CG30361-PF | 469..1248 | 1..780 | 4133 | 100 | Plus |
| mtt-PE | 1095 | CG30361-PE | 316..1095 | 1..780 | 4133 | 100 | Plus |
| mtt-PD | 1415 | CG30361-PD | 636..1415 | 1..780 | 4133 | 100 | Plus |
| mtt-PC | 780 | CG30361-PC | 1..780 | 1..780 | 4133 | 100 | Plus |
