BO20890.complete Sequence
505 bp assembled on 2009-05-13
GenBank Submission: KX797164
> BO20890.complete
GAAGTTATCAGTCGACATGGATAACAAGAGCGAGAAGGTTACGGTGAACA
AGGAGGAGCTGCGCAAGCGCCTGACCCCGGTGCAGTATCAGGTTACCCAG
GAGGCGGGCACCGAGCGACCCTTCACAGGTTGCTACAACAAACACTACGA
GAAGGGCGTGTACCAGTGCATCGTGTGCCACCAGGATCTGTTCAGCTCGG
AGACCAAGTACGACTCGGGATGCGGATGGCCGGCCTTCAACGATGTCCTA
GACAAGGGCAAGGTCACGCTGCACCGCGATGCCAGCATACCAGTAGTCAT
TTCGAAAACGCTAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCGATGCT
CCGCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGCATCGA
CGCTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCGACGCC
ATCGAAGGCGGATCCATCGACGGCCTCGTCCAAGAAAGCAAGCTTTCTAG
ACCAT
BO20890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RG | 474 | CG6584-PG | 1..471 | 17..487 | 2355 | 100 | Plus |
| SelR-RJ | 579 | CG6584-PJ | 127..576 | 17..487 | 2005 | 95.5 | Plus |
| SelR-RH | 453 | CG6584-PH | 1..450 | 17..487 | 2005 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RG | 2298 | CG6584-RG | 261..731 | 17..487 | 2355 | 100 | Plus |
| SelR-RJ | 2392 | CG6584-RJ | 376..825 | 17..487 | 2005 | 95.5 | Plus |
| SelR-RH | 2277 | CG6584-RH | 261..710 | 17..487 | 2005 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10865454..10865650 | 487..291 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 293..124 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:35:40 has no hits.
BO20890.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:49 Download gff for
BO20890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 276..746 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:24 Download gff for
BO20890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 261..731 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:42 Download gff for
BO20890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RG | 261..731 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:42 Download gff for
BO20890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10865452..10865647 | 294..489 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 129..293 | 100 | <- | Minus |
| 3R | 10866809..10866920 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:24 Download gff for
BO20890.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6691174..6691369 | 294..489 | 98 | <- | Minus |
| arm_3R | 6692251..6692415 | 129..293 | 100 | <- | Minus |
| arm_3R | 6692531..6692642 | 17..128 | 100 | | Minus |
BO20890.pep Sequence
Translation from 16 to 505
> BO20890.pep
MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQ
CIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPVVISKTLG
MVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKSATPSKADP
STASSKKASFLDH
BO20890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-PG | 157 | CG6584-PG | 1..157 | 1..157 | 847 | 100 | Plus |
| SelR-PH | 150 | CG6584-PH | 1..150 | 1..157 | 799 | 95.5 | Plus |
| SelR-PJ | 192 | CG6584-PJ | 43..192 | 1..157 | 799 | 95.5 | Plus |
| SelR-PI | 155 | CG6584-PI | 1..150 | 1..158 | 672 | 79.7 | Plus |
| SelR-PA | 155 | CG6584-PA | 1..150 | 1..158 | 672 | 79.7 | Plus |
