Clone BO20896 Report

Search the DGRC for BO20896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:208
Well:96
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO20896.pep: Imported from assembly
Sequenced Size:469

Clone Sequence Records

BO20896.complete Sequence

469 bp assembled on 2009-05-13

> BO20896.complete
GAAGTTATCAGTCGACATGCGAGTTAGTTTCGTTTCAAGCGTCACTGAGA
TCACAAAAGCCAACATGAAGTTCGCCGTTGTCGTAGTCCTGTTCGCTTTG
GCCTGGGGTGTCAACAGCTCGGTGGTGCCTCTCCTGACCTCCGCCCATGG
TCTGGTGGTCGGTTCTCCCGCCGTCGCCGGTTCGGTGGCCATCCAGGCAT
CTGCGGTTCCCGCTGCCGTTCCCCTGTCCCTGTCCCCAGCCGGACCCGTG
CTCATCCAGTCTGGACCAGCGGTGGTTGCCGCTCCCGTTCCCGCCGCTGT
GGTTGCTGCCCACGCCCCCGCCGTGGTGGCCGTCGCCGCTCCGGAGGCCA
GCTATGTGGCCAAGACCCGTGGAGCTGTCCATGTGGCTCCTCTGCCAGGA
CATGTGCAGTCCGCTGCTTCCGTGAACTTGGAACCCGCACCAGGCACCTG
GGCAAGCTTTCTAGACCAT

BO20896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7203-RC 390 CG7203-PC 1..387 65..451 1935 100 Plus
CG7203-RB 390 CG7203-PB 1..387 65..451 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7203-RC 730 CG7203-RC 37..466 22..451 2150 100 Plus
CG7203-RB 697 CG7203-RB 4..433 22..451 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7752434..7752816 451..69 1915 100 Minus
2L 23513712 2L 7753102..7753150 70..22 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:46:32 has no hits.

BO20896.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:45 Download gff for BO20896.complete
Subject Subject Range Query Range Percent Splice Strand
CG7203-RB 2..436 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:06 Download gff for BO20896.complete
Subject Subject Range Query Range Percent Splice Strand
CG7203-RB 1..433 21..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:16 Download gff for BO20896.complete
Subject Subject Range Query Range Percent Splice Strand
CG7203-RB 1..433 21..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:16 Download gff for BO20896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7752432..7752814 71..453 99 <- Minus
2L 7753102..7753155 17..70 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:06 Download gff for BO20896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7752432..7752814 71..453 99 <- Minus
arm_2L 7753102..7753155 17..70 96   Minus

BO20896.pep Sequence

Translation from 16 to 469

> BO20896.pep
MRVSFVSSVTEITKANMKFAVVVVLFALAWGVNSSVVPLLTSAHGLVVGS
PAVAGSVAIQASAVPAAVPLSLSPAGPVLIQSGPAVVAAPVPAAVVAAHA
PAVVAVAAPEASYVAKTRGAVHVAPLPGHVQSAASVNLEPAPGTWASFLD
H

BO20896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7203-PC 129 CG7203-PC 1..129 17..145 632 100 Plus
CG7203-PB 129 CG7203-PB 1..129 17..145 632 100 Plus
Acp1-PA 135 CG7216-PA 1..134 17..144 276 52.9 Plus
CG31904-PB 403 CG31904-PB 221..341 16..130 214 48.8 Plus
CG31904-PD 403 CG31904-PD 221..341 16..130 214 48.8 Plus